Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 TSPY15P-201ENST00000457163 923 ntBASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 BX119927.1-201ENST00000636596 1552 ntBASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA4Q9Y5G9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 AC011270.2-201ENST00000624293 2550 ntBASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 AC020916.1-201ENST00000587762 1774 ntBASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.13■□□□□ 0.65
PCDHGA4Q9Y5G9 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 MTATP6P19-201ENST00000413797 659 ntBASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 AC006557.6-201ENST00000623071 864 ntBASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 AC097493.4-201ENST00000641197 219 ntBASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 AC099778.1-201ENST00000568593 1911 ntBASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDHGA4Q9Y5G9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 PRKY-204ENST00000533551 1019 ntBASIC19.11■□□□□ 0.65
PCDHGA4Q9Y5G9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms