Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 TSPY15P-201ENST00000457163 923 ntBASIC19.61■□□□□ 0.73
LHX3Q9UBR4 AC011506.1-201ENST00000474329 610 ntBASIC19.61■□□□□ 0.73
LHX3Q9UBR4 AC116562.2-201ENST00000507042 360 ntBASIC19.61■□□□□ 0.73
LHX3Q9UBR4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 REXO1L10P-201ENST00000615707 1290 ntBASIC19.61■□□□□ 0.73
LHX3Q9UBR4 REXO1L12P-201ENST00000622156 912 ntBASIC19.61■□□□□ 0.73
LHX3Q9UBR4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.61■□□□□ 0.73
LHX3Q9UBR4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 KRT17P2-201ENST00000300992 1314 ntBASIC19.6■□□□□ 0.73
LHX3Q9UBR4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 AL355075.4-201ENST00000554988 638 ntBASIC19.6■□□□□ 0.73
LHX3Q9UBR4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LHX3Q9UBR4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 RCC2P6-201ENST00000526625 1557 ntBASIC19.59■□□□□ 0.73
LHX3Q9UBR4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 B3GAT3P1-201ENST00000471720 806 ntBASIC19.59■□□□□ 0.73
LHX3Q9UBR4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 MIR6786-201ENST00000616843 113 ntBASIC19.59■□□□□ 0.73
LHX3Q9UBR4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LHX3Q9UBR4 Z82202.1-201ENST00000623446 1880 ntBASIC19.58■□□□□ 0.73
LHX3Q9UBR4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.58■□□□□ 0.73
LHX3Q9UBR4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.58■□□□□ 0.73
LHX3Q9UBR4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.58■□□□□ 0.73
LHX3Q9UBR4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LHX3Q9UBR4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
LHX3Q9UBR4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
LHX3Q9UBR4 KRT8P41-201ENST00000533985 1514 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms