Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 AC008687.6-201ENST00000596318 630 ntBASIC20.06■□□□□ 0.8
PCDH9Q9HC56 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 AP003097.1-201ENST00000530657 1135 ntBASIC20.05■□□□□ 0.8
PCDH9Q9HC56 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 AC120498.8-201ENST00000614275 531 ntBASIC20.05■□□□□ 0.8
PCDH9Q9HC56 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDH9Q9HC56 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 RPS2P52-201ENST00000469610 820 ntBASIC20.04■□□□□ 0.8
PCDH9Q9HC56 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 AC008403.3-201ENST00000598924 454 ntBASIC20.04■□□□□ 0.8
PCDH9Q9HC56 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDH9Q9HC56 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 AC026366.1-201ENST00000488803 879 ntBASIC20.03■□□□□ 0.8
PCDH9Q9HC56 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDH9Q9HC56 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 AC124283.5-201ENST00000624661 1809 ntBASIC20.02■□□□□ 0.8
PCDH9Q9HC56 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.02■□□□□ 0.8
PCDH9Q9HC56 MIR4651-201ENST00000582622 73 ntBASIC20.02■□□□□ 0.8
PCDH9Q9HC56 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms