Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 KRT8P41-201ENST00000533985 1514 ntBASIC24.31■■□□□ 1.48
USP44Q9H0E7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC24.31■■□□□ 1.48
USP44Q9H0E7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC24.31■■□□□ 1.48
USP44Q9H0E7 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
USP44Q9H0E7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 RCC2P6-201ENST00000526625 1557 ntBASIC24.31■■□□□ 1.48
USP44Q9H0E7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC24.31■■□□□ 1.48
USP44Q9H0E7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.31■■□□□ 1.48
USP44Q9H0E7 MIR6786-201ENST00000616843 113 ntBASIC24.31■■□□□ 1.48
USP44Q9H0E7 Z82202.1-201ENST00000623446 1880 ntBASIC24.31■■□□□ 1.48
USP44Q9H0E7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
USP44Q9H0E7 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP44Q9H0E7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP44Q9H0E7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USP44Q9H0E7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP44Q9H0E7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
USP44Q9H0E7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USP44Q9H0E7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC24.3■■□□□ 1.48
USP44Q9H0E7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC24.3■■□□□ 1.48
USP44Q9H0E7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC24.3■■□□□ 1.48
USP44Q9H0E7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24.3■■□□□ 1.48
USP44Q9H0E7 SDHAP1-207ENST00000440850 2000 ntBASIC24.3■■□□□ 1.48
USP44Q9H0E7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
USP44Q9H0E7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP44Q9H0E7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP44Q9H0E7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP44Q9H0E7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP44Q9H0E7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP44Q9H0E7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP44Q9H0E7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP44Q9H0E7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC24.29■■□□□ 1.48
USP44Q9H0E7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP44Q9H0E7 AC079598.2-202ENST00000546624 1451 ntBASIC24.28■■□□□ 1.48
USP44Q9H0E7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
USP44Q9H0E7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.28■■□□□ 1.48
USP44Q9H0E7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC24.28■■□□□ 1.48
USP44Q9H0E7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP44Q9H0E7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC24.28■■□□□ 1.48
USP44Q9H0E7 RBM17P1-201ENST00000453646 1190 ntBASIC24.28■■□□□ 1.48
USP44Q9H0E7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP44Q9H0E7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC24.28■■□□□ 1.48
USP44Q9H0E7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP44Q9H0E7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC24.28■■□□□ 1.48
USP44Q9H0E7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP44Q9H0E7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP44Q9H0E7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 FSCN1P1-201ENST00000568912 1481 ntBASIC24.27■■□□□ 1.48
USP44Q9H0E7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 AC091390.4-202ENST00000476426 537 ntBASIC24.27■■□□□ 1.48
USP44Q9H0E7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC24.27■■□□□ 1.48
USP44Q9H0E7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP44Q9H0E7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.26■■□□□ 1.47
USP44Q9H0E7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP44Q9H0E7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP44Q9H0E7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC24.25■■□□□ 1.47
USP44Q9H0E7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms