Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 AP002982.1-201ENST00000492365 877 ntBASIC19.3■□□□□ 0.68
VPS35Q96QK1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 Z99916.2-201ENST00000604037 246 ntBASIC19.3■□□□□ 0.68
VPS35Q96QK1 AP001412.1-201ENST00000608405 714 ntBASIC19.3■□□□□ 0.68
VPS35Q96QK1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 TREX1-205ENST00000625293 1783 ntBASIC19.29■□□□□ 0.68
VPS35Q96QK1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VPS35Q96QK1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS35Q96QK1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 KSR1P1-201ENST00000446298 240 ntBASIC19.28■□□□□ 0.68
VPS35Q96QK1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 AC073195.1-201ENST00000607241 877 ntBASIC19.28■□□□□ 0.68
VPS35Q96QK1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS35Q96QK1 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VPS35Q96QK1 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 RPS2P4-201ENST00000476944 856 ntBASIC19.27■□□□□ 0.68
VPS35Q96QK1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 AL445675.2-201ENST00000620291 557 ntBASIC19.27■□□□□ 0.68
VPS35Q96QK1 HLA-A-209ENST00000638375 975 ntBASIC19.27■□□□□ 0.68
VPS35Q96QK1 AL049637.2-201ENST00000641778 930 ntBASIC19.27■□□□□ 0.68
VPS35Q96QK1 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
VPS35Q96QK1 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS35Q96QK1 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS35Q96QK1 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS35Q96QK1 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VPS35Q96QK1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 PCDHAC2-203ENST00000615316 3011 ntBASIC19.26■□□□□ 0.67
VPS35Q96QK1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms