Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 LINC01238-205ENST00000567549 1107 ntBASIC19.78■□□□□ 0.76
CHFRQ96EP1 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.78■□□□□ 0.76
CHFRQ96EP1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHFRQ96EP1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CHFRQ96EP1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CHFRQ96EP1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CHFRQ96EP1 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 UPK3BP1-201ENST00000428678 509 ntBASIC19.77■□□□□ 0.76
CHFRQ96EP1 TSPY17P-201ENST00000450329 467 ntBASIC19.77■□□□□ 0.76
CHFRQ96EP1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.77■□□□□ 0.76
CHFRQ96EP1 CKBP1-201ENST00000565489 1086 ntBASIC19.77■□□□□ 0.76
CHFRQ96EP1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.77■□□□□ 0.76
CHFRQ96EP1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHFRQ96EP1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.77■□□□□ 0.75
CHFRQ96EP1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.77■□□□□ 0.75
CHFRQ96EP1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CHFRQ96EP1 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.76■□□□□ 0.75
CHFRQ96EP1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.76■□□□□ 0.75
CHFRQ96EP1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHFRQ96EP1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 CA15P1-201ENST00000481698 905 ntBASIC19.75■□□□□ 0.75
CHFRQ96EP1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 AC091076.1-201ENST00000610741 619 ntBASIC19.75■□□□□ 0.75
CHFRQ96EP1 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.75■□□□□ 0.75
CHFRQ96EP1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 AL391422.3-201ENST00000603791 2761 ntBASIC19.75■□□□□ 0.75
CHFRQ96EP1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
CHFRQ96EP1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHFRQ96EP1 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms