Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 AC130371.2-201ENST00000619443 611 ntBASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 AL590326.2-201ENST00000625139 305 ntBASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 RCC2P6-201ENST00000526625 1557 ntBASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 TMEM179-206ENST00000616017 1645 ntBASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 AC073314.1-201ENST00000568729 2216 ntBASIC20.41■□□□□ 0.86
SHKBP1Q8TBC3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 ARMC10P1-201ENST00000313754 855 ntBASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 AC010203.1-204ENST00000548782 407 ntBASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHKBP1Q8TBC3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHKBP1Q8TBC3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHKBP1Q8TBC3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHKBP1Q8TBC3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 TSPY14P-201ENST00000303979 915 ntBASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 EGLN1P1-201ENST00000531623 762 ntBASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 AP000692.2-201ENST00000608391 879 ntBASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 AC011298.2-201ENST00000617989 482 ntBASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.39■□□□□ 0.85
SHKBP1Q8TBC3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 ECEL1P2-202ENST00000465689 757 ntBASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 SLC25A1P4-201ENST00000567977 778 ntBASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.38■□□□□ 0.85
SHKBP1Q8TBC3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 INGX-201ENST00000359239 846 ntBASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHKBP1Q8TBC3 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SHKBP1Q8TBC3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHKBP1Q8TBC3 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHKBP1Q8TBC3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHKBP1Q8TBC3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms