Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SMC1BQ8NDV3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SMC1BQ8NDV3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SMC1BQ8NDV3 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SMC1BQ8NDV3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SMC1BQ8NDV3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SMC1BQ8NDV3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SMC1BQ8NDV3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 IL9RP2-201ENST00000423948 1312 ntBASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SMC1BQ8NDV3 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 DRAXINP1-201ENST00000437611 948 ntBASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 LINC00265-3P-201ENST00000447588 903 ntBASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 KRT16P4-201ENST00000453883 522 ntBASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 AC012615.1-201ENST00000565797 1299 ntBASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
SMC1BQ8NDV3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 TPSP2-201ENST00000561760 610 ntBASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC1BQ8NDV3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.04■■□□□ 1.28
SMC1BQ8NDV3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms