Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.7■■□□□ 1.06
USP38Q8NB14 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USP38Q8NB14 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.7■■□□□ 1.06
USP38Q8NB14 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.7■■□□□ 1.06
USP38Q8NB14 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.7■■□□□ 1.06
USP38Q8NB14 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.7■■□□□ 1.06
USP38Q8NB14 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.7■■□□□ 1.06
USP38Q8NB14 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
USP38Q8NB14 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP38Q8NB14 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.7■■□□□ 1.06
USP38Q8NB14 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USP38Q8NB14 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP38Q8NB14 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP38Q8NB14 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP38Q8NB14 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USP38Q8NB14 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP38Q8NB14 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.69■■□□□ 1.06
USP38Q8NB14 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.69■■□□□ 1.06
USP38Q8NB14 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.69■■□□□ 1.06
USP38Q8NB14 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 KRT18P48-201ENST00000434763 852 ntBASIC21.69■■□□□ 1.06
USP38Q8NB14 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
USP38Q8NB14 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.69■■□□□ 1.06
USP38Q8NB14 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.69■■□□□ 1.06
USP38Q8NB14 AC116351.2-201ENST00000606540 1585 ntBASIC21.69■■□□□ 1.06
USP38Q8NB14 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.69■■□□□ 1.06
USP38Q8NB14 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP38Q8NB14 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.68■■□□□ 1.06
USP38Q8NB14 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
USP38Q8NB14 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.68■■□□□ 1.06
USP38Q8NB14 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.68■■□□□ 1.06
USP38Q8NB14 DUSP5P1-201ENST00000441325 1139 ntBASIC21.68■■□□□ 1.06
USP38Q8NB14 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.68■■□□□ 1.06
USP38Q8NB14 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.68■■□□□ 1.06
USP38Q8NB14 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.68■■□□□ 1.06
USP38Q8NB14 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.68■■□□□ 1.06
USP38Q8NB14 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
USP38Q8NB14 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 DPP3P2-201ENST00000416030 1696 ntBASIC21.68■■□□□ 1.06
USP38Q8NB14 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.68■■□□□ 1.06
USP38Q8NB14 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.68■■□□□ 1.06
USP38Q8NB14 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.68■■□□□ 1.06
USP38Q8NB14 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP38Q8NB14 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP38Q8NB14 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
USP38Q8NB14 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.67■■□□□ 1.06
USP38Q8NB14 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.67■■□□□ 1.06
USP38Q8NB14 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP38Q8NB14 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP38Q8NB14 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
USP38Q8NB14 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP38Q8NB14 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
USP38Q8NB14 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.67■■□□□ 1.06
USP38Q8NB14 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.67■■□□□ 1.06
USP38Q8NB14 C1QL1P1-201ENST00000568105 661 ntBASIC21.67■■□□□ 1.06
USP38Q8NB14 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
USP38Q8NB14 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
USP38Q8NB14 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.67■■□□□ 1.06
USP38Q8NB14 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
USP38Q8NB14 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.67■■□□□ 1.06
USP38Q8NB14 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
USP38Q8NB14 AL031985.4-201ENST00000642138 673 ntBASIC21.67■■□□□ 1.06
USP38Q8NB14 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
USP38Q8NB14 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP38Q8NB14 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP38Q8NB14 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP38Q8NB14 AC099778.1-201ENST00000568593 1911 ntBASIC21.67■■□□□ 1.06
USP38Q8NB14 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP38Q8NB14 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP38Q8NB14 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP38Q8NB14 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.66■■□□□ 1.06
USP38Q8NB14 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP38Q8NB14 YBX1P10-201ENST00000444752 975 ntBASIC21.66■■□□□ 1.06
USP38Q8NB14 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.66■■□□□ 1.06
USP38Q8NB14 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.66■■□□□ 1.06
USP38Q8NB14 FITM1-202ENST00000559294 800 ntBASIC21.66■■□□□ 1.06
USP38Q8NB14 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP38Q8NB14 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP38Q8NB14 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP38Q8NB14 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.66■■□□□ 1.06
USP38Q8NB14 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms