Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS52Q8N1B4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VPS52Q8N1B4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS52Q8N1B4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS52Q8N1B4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VPS52Q8N1B4 AC020907.5-201ENST00000624372 1936 ntBASIC21.04■□□□□ 0.96
VPS52Q8N1B4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
VPS52Q8N1B4 AC073508.3-201ENST00000619697 1419 ntBASIC21.04■□□□□ 0.96
VPS52Q8N1B4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 AC018553.1-201ENST00000616682 1458 ntBASIC21.03■□□□□ 0.96
VPS52Q8N1B4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 YBX1P10-201ENST00000444752 975 ntBASIC21.03■□□□□ 0.96
VPS52Q8N1B4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS52Q8N1B4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
VPS52Q8N1B4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS52Q8N1B4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS52Q8N1B4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
VPS52Q8N1B4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
VPS52Q8N1B4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 TUBB8P6-201ENST00000436895 1288 ntBASIC21.01■□□□□ 0.95
VPS52Q8N1B4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 B3GAT3P1-201ENST00000471720 806 ntBASIC21.01■□□□□ 0.95
VPS52Q8N1B4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS52Q8N1B4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21■□□□□ 0.95
VPS52Q8N1B4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS52Q8N1B4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21■□□□□ 0.95
VPS52Q8N1B4 AC011506.1-201ENST00000474329 610 ntBASIC21■□□□□ 0.95
VPS52Q8N1B4 KRT18P16-201ENST00000510337 1294 ntBASIC21■□□□□ 0.95
VPS52Q8N1B4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21■□□□□ 0.95
VPS52Q8N1B4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21■□□□□ 0.95
VPS52Q8N1B4 C2orf69P3-201ENST00000565542 1120 ntBASIC21■□□□□ 0.95
VPS52Q8N1B4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21■□□□□ 0.95
VPS52Q8N1B4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21■□□□□ 0.95
VPS52Q8N1B4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21■□□□□ 0.95
VPS52Q8N1B4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VPS52Q8N1B4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VPS52Q8N1B4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VPS52Q8N1B4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS52Q8N1B4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS52Q8N1B4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms