Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 AC098818.2-201ENST00000564925 2320 ntBASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.26■□□□□ 0.83
RFWD3Q6PCD5 TCF3P1-201ENST00000423021 1937 ntBASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 AP001412.1-201ENST00000608405 714 ntBASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFWD3Q6PCD5 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 KRT18P16-201ENST00000510337 1294 ntBASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 TMEM179-206ENST00000616017 1645 ntBASIC20.24■□□□□ 0.83
RFWD3Q6PCD5 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 FAM197Y1-201ENST00000421178 764 ntBASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 TUBB8P6-201ENST00000436895 1288 ntBASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 AP002982.1-201ENST00000492365 877 ntBASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFWD3Q6PCD5 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 AC018445.3-201ENST00000624177 1945 ntBASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 AL353807.1-201ENST00000427475 662 ntBASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 C1QL1P1-201ENST00000568105 661 ntBASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 CD177P1-201ENST00000606252 935 ntBASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFWD3Q6PCD5 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms