Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
HSPG2P98160 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC12.09□□□□□ -0.47
HSPG2P98160 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 CHCHD2P8-201ENST00000429873 447 ntBASIC12.09□□□□□ -0.47
HSPG2P98160 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC12.09□□□□□ -0.47
HSPG2P98160 PGAM5P1-201ENST00000518923 814 ntBASIC12.09□□□□□ -0.47
HSPG2P98160 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HSPG2P98160 RPL18-209ENST00000550645 463 ntTSL 5 BASIC12.09□□□□□ -0.47
HSPG2P98160 RPL18-214ENST00000552588 559 ntTSL 3 BASIC12.09□□□□□ -0.47
HSPG2P98160 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC12.09□□□□□ -0.47
HSPG2P98160 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.09□□□□□ -0.47
HSPG2P98160 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
HSPG2P98160 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC12.08□□□□□ -0.48
HSPG2P98160 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 MIR940-201ENST00000401276 94 ntBASIC12.08□□□□□ -0.48
HSPG2P98160 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HSPG2P98160 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC12.08□□□□□ -0.48
HSPG2P98160 WDR6-223ENST00000627177 207 ntTSL 2 BASIC12.08□□□□□ -0.48
HSPG2P98160 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC12.08□□□□□ -0.48
HSPG2P98160 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 AC093525.10-201ENST00000625130 1569 ntBASIC12.08□□□□□ -0.48
HSPG2P98160 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 DERL1-203ENST00000419562 918 ntTSL 2 BASIC12.08□□□□□ -0.48
HSPG2P98160 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC12.08□□□□□ -0.48
HSPG2P98160 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC12.08□□□□□ -0.48
HSPG2P98160 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC12.08□□□□□ -0.48
HSPG2P98160 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC12.08□□□□□ -0.48
HSPG2P98160 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HSPG2P98160 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 AC106730.1-201ENST00000566722 1090 ntBASIC12.07□□□□□ -0.48
HSPG2P98160 AP001160.2-201ENST00000596071 487 ntBASIC12.07□□□□□ -0.48
HSPG2P98160 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC12.07□□□□□ -0.48
HSPG2P98160 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC12.07□□□□□ -0.48
HSPG2P98160 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC12.07□□□□□ -0.48
HSPG2P98160 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
HSPG2P98160 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC12.07□□□□□ -0.48
HSPG2P98160 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC12.07□□□□□ -0.48
HSPG2P98160 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC12.07□□□□□ -0.48
HSPG2P98160 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 AC079602.3-201ENST00000623931 403 ntBASIC12.07□□□□□ -0.48
HSPG2P98160 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HSPG2P98160 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HSPG2P98160 KRT8P26-201ENST00000534154 1276 ntBASIC12.07□□□□□ -0.48
HSPG2P98160 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HSPG2P98160 PIN1-206ENST00000587625 878 ntTSL 2 BASIC12.07□□□□□ -0.48
HSPG2P98160 TK1-205ENST00000590862 642 ntTSL 3 BASIC12.07□□□□□ -0.48
HSPG2P98160 AL139424.1-201ENST00000607572 797 ntBASIC12.07□□□□□ -0.48
HSPG2P98160 AL353801.3-201ENST00000609898 542 ntBASIC12.07□□□□□ -0.48
HSPG2P98160 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HSPG2P98160 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC12.06□□□□□ -0.48
HSPG2P98160 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HSPG2P98160 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC12.06□□□□□ -0.48
HSPG2P98160 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HSPG2P98160 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HSPG2P98160 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HSPG2P98160 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.06□□□□□ -0.48
HSPG2P98160 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC12.06□□□□□ -0.48
HSPG2P98160 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC12.06□□□□□ -0.48
HSPG2P98160 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HSPG2P98160 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HSPG2P98160 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HSPG2P98160 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HSPG2P98160 SAPCD2P3-201ENST00000455031 850 ntBASIC12.06□□□□□ -0.48
HSPG2P98160 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms