Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SUMO3P55854 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.61■□□□□ 0.41
SUMO3P55854 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 KSR1P1-201ENST00000446298 240 ntBASIC17.61■□□□□ 0.41
SUMO3P55854 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
SUMO3P55854 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.61■□□□□ 0.41
SUMO3P55854 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.61■□□□□ 0.41
SUMO3P55854 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.61■□□□□ 0.41
SUMO3P55854 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SUMO3P55854 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.6■□□□□ 0.41
SUMO3P55854 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
SUMO3P55854 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.6■□□□□ 0.41
SUMO3P55854 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.6■□□□□ 0.41
SUMO3P55854 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SUMO3P55854 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.6■□□□□ 0.41
SUMO3P55854 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.6■□□□□ 0.41
SUMO3P55854 AL160286.2-201ENST00000567150 934 ntBASIC17.6■□□□□ 0.41
SUMO3P55854 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.6■□□□□ 0.41
SUMO3P55854 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
SUMO3P55854 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SUMO3P55854 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SUMO3P55854 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SUMO3P55854 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SUMO3P55854 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.59■□□□□ 0.41
SUMO3P55854 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.59■□□□□ 0.41
SUMO3P55854 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 Z82202.1-201ENST00000623446 1880 ntBASIC17.59■□□□□ 0.41
SUMO3P55854 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.59■□□□□ 0.41
SUMO3P55854 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.59■□□□□ 0.41
SUMO3P55854 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.59■□□□□ 0.41
SUMO3P55854 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.59■□□□□ 0.41
SUMO3P55854 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.59■□□□□ 0.41
SUMO3P55854 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.59■□□□□ 0.41
SUMO3P55854 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.59■□□□□ 0.41
SUMO3P55854 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.59■□□□□ 0.41
SUMO3P55854 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.59■□□□□ 0.41
SUMO3P55854 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SUMO3P55854 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SUMO3P55854 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.59■□□□□ 0.41
SUMO3P55854 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
SUMO3P55854 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SUMO3P55854 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
SUMO3P55854 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.58■□□□□ 0.41
SUMO3P55854 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.41
SUMO3P55854 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.58■□□□□ 0.41
SUMO3P55854 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.58■□□□□ 0.41
SUMO3P55854 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SUMO3P55854 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SUMO3P55854 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SUMO3P55854 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SUMO3P55854 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SUMO3P55854 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
SUMO3P55854 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.58■□□□□ 0.4
SUMO3P55854 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SUMO3P55854 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SUMO3P55854 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SUMO3P55854 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SUMO3P55854 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SUMO3P55854 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.58■□□□□ 0.4
SUMO3P55854 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.58■□□□□ 0.4
SUMO3P55854 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SUMO3P55854 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.58■□□□□ 0.4
SUMO3P55854 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SUMO3P55854 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.58■□□□□ 0.4
SUMO3P55854 AF186192.3-201ENST00000583427 947 ntBASIC17.58■□□□□ 0.4
SUMO3P55854 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms