Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 MYC-209ENST00000641252 345 ntBASIC18.8■□□□□ 0.6
FOXA1P55317 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
FOXA1P55317 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.8■□□□□ 0.6
FOXA1P55317 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.8■□□□□ 0.6
FOXA1P55317 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.8■□□□□ 0.6
FOXA1P55317 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.8■□□□□ 0.6
FOXA1P55317 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.8■□□□□ 0.6
FOXA1P55317 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
FOXA1P55317 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
FOXA1P55317 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.79■□□□□ 0.6
FOXA1P55317 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
FOXA1P55317 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
FOXA1P55317 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
FOXA1P55317 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.79■□□□□ 0.6
FOXA1P55317 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.79■□□□□ 0.6
FOXA1P55317 NCF1B-203ENST00000435988 1254 ntBASIC18.79■□□□□ 0.6
FOXA1P55317 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.79■□□□□ 0.6
FOXA1P55317 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.79■□□□□ 0.6
FOXA1P55317 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.79■□□□□ 0.6
FOXA1P55317 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
FOXA1P55317 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.79■□□□□ 0.6
FOXA1P55317 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.79■□□□□ 0.6
FOXA1P55317 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
FOXA1P55317 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
FOXA1P55317 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA1P55317 AC104417.2-201ENST00000562989 1793 ntBASIC18.78■□□□□ 0.6
FOXA1P55317 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
FOXA1P55317 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
FOXA1P55317 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
FOXA1P55317 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXA1P55317 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXA1P55317 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.78■□□□□ 0.6
FOXA1P55317 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.78■□□□□ 0.6
FOXA1P55317 AC098934.4-201ENST00000564127 592 ntBASIC18.78■□□□□ 0.6
FOXA1P55317 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.78■□□□□ 0.6
FOXA1P55317 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXA1P55317 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXA1P55317 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
FOXA1P55317 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
FOXA1P55317 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXA1P55317 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
FOXA1P55317 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA1P55317 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 AC092368.3-202ENST00000574180 1591 ntBASIC18.77■□□□□ 0.6
FOXA1P55317 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXA1P55317 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXA1P55317 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 SLC29A4P1-201ENST00000398760 971 ntBASIC18.77■□□□□ 0.6
FOXA1P55317 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
FOXA1P55317 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXA1P55317 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.77■□□□□ 0.6
FOXA1P55317 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXA1P55317 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA1P55317 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
FOXA1P55317 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
FOXA1P55317 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
FOXA1P55317 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
FOXA1P55317 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXA1P55317 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
FOXA1P55317 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA1P55317 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
FOXA1P55317 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXA1P55317 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms