Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXA9P31269 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
HOXA9P31269 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXA9P31269 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXA9P31269 UPK3BP1-201ENST00000428678 509 ntBASIC20.25■□□□□ 0.83
HOXA9P31269 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
HOXA9P31269 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.25■□□□□ 0.83
HOXA9P31269 PRSS44-201ENST00000515154 1146 ntBASIC20.25■□□□□ 0.83
HOXA9P31269 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.25■□□□□ 0.83
HOXA9P31269 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.25■□□□□ 0.83
HOXA9P31269 AC011558.1-201ENST00000623459 338 ntBASIC20.25■□□□□ 0.83
HOXA9P31269 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
HOXA9P31269 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXA9P31269 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
HOXA9P31269 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA9P31269 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HOXA9P31269 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXA9P31269 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.24■□□□□ 0.83
HOXA9P31269 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.24■□□□□ 0.83
HOXA9P31269 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.24■□□□□ 0.83
HOXA9P31269 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 AL121956.5-201ENST00000625261 221 ntBASIC20.24■□□□□ 0.83
HOXA9P31269 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HOXA9P31269 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXA9P31269 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXA9P31269 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA9P31269 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXA9P31269 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXA9P31269 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXA9P31269 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXA9P31269 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXA9P31269 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXA9P31269 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXA9P31269 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.23■□□□□ 0.83
HOXA9P31269 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.23■□□□□ 0.83
HOXA9P31269 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXA9P31269 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXA9P31269 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXA9P31269 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.23■□□□□ 0.83
HOXA9P31269 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXA9P31269 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXA9P31269 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXA9P31269 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXA9P31269 LINC01465-201ENST00000408887 1940 ntBASIC20.22■□□□□ 0.83
HOXA9P31269 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXA9P31269 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXA9P31269 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.22■□□□□ 0.83
HOXA9P31269 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXA9P31269 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXA9P31269 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXA9P31269 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXA9P31269 AP003041.3-201ENST00000527151 707 ntBASIC20.22■□□□□ 0.83
HOXA9P31269 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXA9P31269 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXA9P31269 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXA9P31269 AC008622.2-201ENST00000617006 1229 ntBASIC20.22■□□□□ 0.83
HOXA9P31269 AP000550.4-202ENST00000639755 178 ntBASIC20.22■□□□□ 0.83
HOXA9P31269 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXA9P31269 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HOXA9P31269 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HOXA9P31269 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXA9P31269 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXA9P31269 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXA9P31269 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXA9P31269 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXA9P31269 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
HOXA9P31269 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXA9P31269 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HOXA9P31269 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXA9P31269 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.21■□□□□ 0.83
HOXA9P31269 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXA9P31269 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXA9P31269 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXA9P31269 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXA9P31269 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HOXA9P31269 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms