Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.34■□□□□ 0.69
MSH3P20585 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MSH3P20585 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
MSH3P20585 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
MSH3P20585 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.33■□□□□ 0.69
MSH3P20585 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.33■□□□□ 0.69
MSH3P20585 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MSH3P20585 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
MSH3P20585 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.33■□□□□ 0.69
MSH3P20585 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH3P20585 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH3P20585 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MSH3P20585 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.33■□□□□ 0.69
MSH3P20585 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
MSH3P20585 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.33■□□□□ 0.68
MSH3P20585 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.33■□□□□ 0.68
MSH3P20585 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH3P20585 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.33■□□□□ 0.68
MSH3P20585 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSH3P20585 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.33■□□□□ 0.68
MSH3P20585 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSH3P20585 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH3P20585 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH3P20585 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.32■□□□□ 0.68
MSH3P20585 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.32■□□□□ 0.68
MSH3P20585 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.32■□□□□ 0.68
MSH3P20585 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
MSH3P20585 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.32■□□□□ 0.68
MSH3P20585 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.32■□□□□ 0.68
MSH3P20585 KRT8P8-201ENST00000434750 1448 ntBASIC19.32■□□□□ 0.68
MSH3P20585 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH3P20585 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.32■□□□□ 0.68
MSH3P20585 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MSH3P20585 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MSH3P20585 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
MSH3P20585 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.31■□□□□ 0.68
MSH3P20585 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.31■□□□□ 0.68
MSH3P20585 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.31■□□□□ 0.68
MSH3P20585 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.31■□□□□ 0.68
MSH3P20585 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH3P20585 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.31■□□□□ 0.68
MSH3P20585 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MSH3P20585 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.3■□□□□ 0.68
MSH3P20585 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
MSH3P20585 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
MSH3P20585 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH3P20585 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSH3P20585 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
MSH3P20585 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.29■□□□□ 0.68
MSH3P20585 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MSH3P20585 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MSH3P20585 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
MSH3P20585 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms