Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.38■□□□□ 0.85
COL6A3P12111 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.38■□□□□ 0.85
COL6A3P12111 LINC00265-3P-201ENST00000447588 903 ntBASIC20.38■□□□□ 0.85
COL6A3P12111 AC004967.1-201ENST00000453589 447 ntBASIC20.38■□□□□ 0.85
COL6A3P12111 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.38■□□□□ 0.85
COL6A3P12111 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.37■□□□□ 0.85
COL6A3P12111 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 COX20P2-201ENST00000452636 358 ntBASIC20.37■□□□□ 0.85
COL6A3P12111 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
COL6A3P12111 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
COL6A3P12111 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 LINC01711-201ENST00000598340 967 ntBASIC20.37■□□□□ 0.85
COL6A3P12111 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A3P12111 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
COL6A3P12111 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A3P12111 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A3P12111 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.36■□□□□ 0.85
COL6A3P12111 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.36■□□□□ 0.85
COL6A3P12111 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 ECEL1P1-201ENST00000373592 1742 ntBASIC20.36■□□□□ 0.85
COL6A3P12111 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.36■□□□□ 0.85
COL6A3P12111 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
COL6A3P12111 HLA-F-220ENST00000434407 884 ntBASIC20.36■□□□□ 0.85
COL6A3P12111 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.36■□□□□ 0.85
COL6A3P12111 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 AC009065.1-201ENST00000564055 1225 ntBASIC20.36■□□□□ 0.85
COL6A3P12111 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A3P12111 AC011484.1-201ENST00000377652 1995 ntBASIC20.36■□□□□ 0.85
COL6A3P12111 PNKD-204ENST00000436005 978 ntTSL 5 BASIC20.36■□□□□ 0.85
COL6A3P12111 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.36■□□□□ 0.85
COL6A3P12111 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL6A3P12111 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
COL6A3P12111 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A3P12111 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A3P12111 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A3P12111 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.35■□□□□ 0.85
COL6A3P12111 AC093525.10-201ENST00000625130 1569 ntBASIC20.35■□□□□ 0.85
COL6A3P12111 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A3P12111 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A3P12111 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.35■□□□□ 0.85
COL6A3P12111 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
COL6A3P12111 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.35■□□□□ 0.85
COL6A3P12111 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A3P12111 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.35■□□□□ 0.85
COL6A3P12111 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A3P12111 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.35■□□□□ 0.85
COL6A3P12111 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.35■□□□□ 0.85
COL6A3P12111 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL6A3P12111 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A3P12111 AL121603.2-201ENST00000557373 2117 ntBASIC20.35■□□□□ 0.85
COL6A3P12111 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A3P12111 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A3P12111 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 TSPY22P-201ENST00000427496 604 ntBASIC20.34■□□□□ 0.85
COL6A3P12111 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.34■□□□□ 0.85
COL6A3P12111 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL6A3P12111 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.34■□□□□ 0.85
COL6A3P12111 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL6A3P12111 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.34■□□□□ 0.85
COL6A3P12111 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.34■□□□□ 0.85
COL6A3P12111 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.34■□□□□ 0.85
COL6A3P12111 MIR7706-201ENST00000613747 67 ntBASIC20.34■□□□□ 0.85
COL6A3P12111 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.34■□□□□ 0.85
COL6A3P12111 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 AC034232.1-201ENST00000506026 1064 ntBASIC20.34■□□□□ 0.85
COL6A3P12111 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A3P12111 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A3P12111 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.33■□□□□ 0.85
COL6A3P12111 FAM197Y8-203ENST00000450145 560 ntBASIC20.33■□□□□ 0.85
COL6A3P12111 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.33■□□□□ 0.85
COL6A3P12111 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.33■□□□□ 0.85
COL6A3P12111 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A3P12111 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A3P12111 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.33■□□□□ 0.84
COL6A3P12111 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.33■□□□□ 0.84
COL6A3P12111 RPS8P6-201ENST00000426177 609 ntBASIC20.33■□□□□ 0.84
COL6A3P12111 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.33■□□□□ 0.84
COL6A3P12111 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
COL6A3P12111 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms