Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
APOBP04114 LSR-203ENST00000360798 1963 ntTSL 2 BASIC12.16□□□□□ -0.46
APOBP04114 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
APOBP04114 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC12.16□□□□□ -0.46
APOBP04114 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
APOBP04114 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
APOBP04114 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC12.16□□□□□ -0.46
APOBP04114 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
APOBP04114 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
APOBP04114 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
APOBP04114 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
APOBP04114 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
APOBP04114 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
APOBP04114 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
APOBP04114 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC12.15□□□□□ -0.46
APOBP04114 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC12.15□□□□□ -0.46
APOBP04114 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 AC011498.5-201ENST00000592027 486 ntBASIC12.15□□□□□ -0.46
APOBP04114 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC12.15□□□□□ -0.46
APOBP04114 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
APOBP04114 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
APOBP04114 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
APOBP04114 AC079781.3-201ENST00000449110 356 ntBASIC12.15□□□□□ -0.47
APOBP04114 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC12.15□□□□□ -0.47
APOBP04114 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
APOBP04114 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC12.15□□□□□ -0.47
APOBP04114 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC12.14□□□□□ -0.47
APOBP04114 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 GLRB-205ENST00000512619 728 ntTSL 3 BASIC12.14□□□□□ -0.47
APOBP04114 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
APOBP04114 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC12.14□□□□□ -0.47
APOBP04114 FEM1AP4-201ENST00000443167 1987 ntBASIC12.14□□□□□ -0.47
APOBP04114 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC12.14□□□□□ -0.47
APOBP04114 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 Z98882.1-201ENST00000622160 2253 ntBASIC12.14□□□□□ -0.47
APOBP04114 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
APOBP04114 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC12.14□□□□□ -0.47
APOBP04114 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC12.14□□□□□ -0.47
APOBP04114 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
APOBP04114 TUB-203ENST00000534099 1759 ntTSL 2 BASIC12.14□□□□□ -0.47
APOBP04114 FEM1AP1-201ENST00000431297 1995 ntBASIC12.14□□□□□ -0.47
APOBP04114 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC12.14□□□□□ -0.47
APOBP04114 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC12.14□□□□□ -0.47
APOBP04114 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC12.14□□□□□ -0.47
APOBP04114 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC12.14□□□□□ -0.47
APOBP04114 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
APOBP04114 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC12.13□□□□□ -0.47
APOBP04114 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC12.13□□□□□ -0.47
APOBP04114 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC12.13□□□□□ -0.47
APOBP04114 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC12.13□□□□□ -0.47
APOBP04114 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 LINC00167-201ENST00000530583 1419 ntBASIC12.13□□□□□ -0.47
APOBP04114 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC12.13□□□□□ -0.47
APOBP04114 BUB3-202ENST00000368859 667 ntTSL 3 BASIC12.13□□□□□ -0.47
APOBP04114 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
APOBP04114 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC12.13□□□□□ -0.47
APOBP04114 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC12.13□□□□□ -0.47
APOBP04114 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
APOBP04114 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms