Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.51■□□□□ 0.23
SDCBPO00560 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.51■□□□□ 0.23
SDCBPO00560 MIR663A-201ENST00000385250 93 ntBASIC16.51■□□□□ 0.23
SDCBPO00560 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 LSM12P1-201ENST00000411836 588 ntBASIC16.51■□□□□ 0.23
SDCBPO00560 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.51■□□□□ 0.23
SDCBPO00560 AC133552.2-202ENST00000575694 574 ntBASIC16.51■□□□□ 0.23
SDCBPO00560 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16.51■□□□□ 0.23
SDCBPO00560 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.51■□□□□ 0.23
SDCBPO00560 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.51■□□□□ 0.23
SDCBPO00560 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.51■□□□□ 0.23
SDCBPO00560 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
SDCBPO00560 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
SDCBPO00560 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.5■□□□□ 0.23
SDCBPO00560 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SDCBPO00560 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.5■□□□□ 0.23
SDCBPO00560 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 AC105036.2-201ENST00000569468 176 ntBASIC16.5■□□□□ 0.23
SDCBPO00560 AL031963.3-201ENST00000606441 850 ntBASIC16.5■□□□□ 0.23
SDCBPO00560 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.5■□□□□ 0.23
SDCBPO00560 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
SDCBPO00560 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.5■□□□□ 0.23
SDCBPO00560 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SDCBPO00560 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDCBPO00560 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SDCBPO00560 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.5■□□□□ 0.23
SDCBPO00560 KRT17P1-201ENST00000399211 1546 ntBASIC16.5■□□□□ 0.23
SDCBPO00560 MKRN4P-201ENST00000444706 1521 ntBASIC16.5■□□□□ 0.23
SDCBPO00560 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.49■□□□□ 0.23
SDCBPO00560 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SDCBPO00560 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SDCBPO00560 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
SDCBPO00560 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SDCBPO00560 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SDCBPO00560 KRT8P20-201ENST00000423953 1409 ntBASIC16.49■□□□□ 0.23
SDCBPO00560 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.49■□□□□ 0.23
SDCBPO00560 AF201337.1-201ENST00000520239 748 ntBASIC16.49■□□□□ 0.23
SDCBPO00560 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.49■□□□□ 0.23
SDCBPO00560 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.49■□□□□ 0.23
SDCBPO00560 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.49■□□□□ 0.23
SDCBPO00560 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.49■□□□□ 0.23
SDCBPO00560 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.49■□□□□ 0.23
SDCBPO00560 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SDCBPO00560 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDCBPO00560 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.49■□□□□ 0.23
SDCBPO00560 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 HLA-G-202ENST00000376815 851 ntBASIC16.48■□□□□ 0.23
SDCBPO00560 HLA-G-203ENST00000376818 1127 ntBASIC16.48■□□□□ 0.23
SDCBPO00560 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SDCBPO00560 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.48■□□□□ 0.23
SDCBPO00560 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.48■□□□□ 0.23
SDCBPO00560 C2orf69P4-201ENST00000565394 541 ntBASIC16.48■□□□□ 0.23
SDCBPO00560 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.48■□□□□ 0.23
SDCBPO00560 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms