Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AL627224.1-201ENST00000448334 444 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 RPL32P14-201ENST00000463196 378 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC104629.2-201ENST00000468627 598 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC090686.1-201ENST00000481577 749 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC121161.1-201ENST00000510606 652 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 RNA5SP249-201ENST00000516127 99 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 IGKV1-32-201ENST00000519290 311 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC104115.2-201ENST00000523026 687 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC137768.1-201ENST00000549998 553 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC063949.1-201ENST00000552900 865 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC087477.6-201ENST00000559595 843 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC015849.2-201ENST00000605738 409 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC022106.2-201ENST00000620114 757 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AC090617.9-201ENST00000623751 147 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AL596275.2-204ENST00000641628 552 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 AL596275.2-206ENST00000641957 626 ntBASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SNX9Q9Y5X1 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
SNX9Q9Y5X1 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
SNX9Q9Y5X1 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.09□□□□□ -1.6
SNX9Q9Y5X1 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SNX9Q9Y5X1 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC007342.7-201ENST00000624610 2337 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AL591848.1-201ENST00000413092 322 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AL158050.1-201ENST00000416077 457 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 E2F6P2-201ENST00000420708 748 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 OR5M12P-201ENST00000423388 929 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC073264.2-201ENST00000448886 166 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 RPL10P17-201ENST00000453852 316 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC079168.2-201ENST00000453977 416 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 RPS29P22-201ENST00000472363 168 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC008897.1-201ENST00000494006 347 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 ARL4AP1-201ENST00000503220 705 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC021087.2-201ENST00000504656 1203 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC118282.1-201ENST00000506408 765 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 FKBP1BP1-201ENST00000553366 325 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AL110118.1-201ENST00000553543 400 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 YWHAZP1-201ENST00000556286 722 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AF230666.2-201ENST00000602328 725 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC112503.2-201ENST00000609005 552 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 FRG1DP-201ENST00000635586 771 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 AC107068.1-201ENST00000563286 4218 ntBASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SNX9Q9Y5X1 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SNX9Q9Y5X1 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms