Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 snoU109.1-201ENST00000459339 135 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.44□□□□□ -1.38
SOX4Q06945 AC083795.1-201ENST00000491760 320 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 AC008629.2-201ENST00000503783 483 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 AC018710.1-201ENST00000506509 158 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.44□□□□□ -1.38
SOX4Q06945 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC6.44□□□□□ -1.38
SOX4Q06945 Y_RNA.675-201ENST00000516389 149 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 MTCO2P4-201ENST00000517968 247 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 IGLVIV-64-201ENST00000518581 301 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 IGJP1-201ENST00000522682 475 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC6.44□□□□□ -1.38
SOX4Q06945 AP000648.1-201ENST00000529682 397 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 AC125611.2-201ENST00000551907 647 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 HMGB1P33-201ENST00000563485 527 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC6.44□□□□□ -1.38
SOX4Q06945 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.44□□□□□ -1.38
SOX4Q06945 AC022432.1-201ENST00000595739 310 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 BNIP3P11-201ENST00000603878 563 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.44□□□□□ -1.38
SOX4Q06945 AL359535.1-201ENST00000612100 1087 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC6.44□□□□□ -1.38
SOX4Q06945 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.44□□□□□ -1.38
SOX4Q06945 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
SOX4Q06945 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX4Q06945 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
SOX4Q06945 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
SOX4Q06945 AC016583.1-201ENST00000624221 2431 ntBASIC6.44□□□□□ -1.38
SOX4Q06945 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.43□□□□□ -1.38
SOX4Q06945 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
SOX4Q06945 RARSP1-201ENST00000542842 1418 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.43□□□□□ -1.38
SOX4Q06945 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SOX4Q06945 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SOX4Q06945 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SOX4Q06945 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 RNU6-433P-201ENST00000363216 104 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 RNU6-1339P-201ENST00000363574 91 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 RNA5SP284-201ENST00000384547 118 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 RNU6-244P-201ENST00000391028 104 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AL161909.1-201ENST00000397390 712 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AL590004.1-201ENST00000405321 300 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC6.43□□□□□ -1.38
SOX4Q06945 USP9YP9-201ENST00000429406 715 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 RPS7P3-201ENST00000443360 580 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.43□□□□□ -1.38
SOX4Q06945 OFD1P4Y-201ENST00000455273 1179 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 OR6K1P-201ENST00000456766 971 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 PMCHL2-203ENST00000457791 237 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AC104164.1-201ENST00000460282 590 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AL122020.1-201ENST00000472287 459 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 HMGN2P25-201ENST00000486956 268 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 RPL7P51-201ENST00000490532 749 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 SNX5P1-201ENST00000505757 1041 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 NDUFB4P2-201ENST00000509515 391 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 OR5M7P-201ENST00000526140 972 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AP001893.2-201ENST00000526949 202 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 OR4A45P-201ENST00000529954 901 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC6.43□□□□□ -1.38
SOX4Q06945 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.43□□□□□ -1.38
SOX4Q06945 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.43□□□□□ -1.38
SOX4Q06945 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.43□□□□□ -1.38
SOX4Q06945 AC137800.2-201ENST00000574375 120 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC6.43□□□□□ -1.38
SOX4Q06945 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.43□□□□□ -1.38
SOX4Q06945 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC6.43□□□□□ -1.38
SOX4Q06945 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.43□□□□□ -1.38
SOX4Q06945 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.43□□□□□ -1.38
SOX4Q06945 AL162730.1-201ENST00000605734 292 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AC103710.1-201ENST00000610003 901 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AC009233.1-201ENST00000616477 371 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.43□□□□□ -1.38
SOX4Q06945 MIR6729-201ENST00000618194 65 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 AC136475.10-201ENST00000620253 385 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 UOX-205ENST00000640983 544 ntTSL 4 BASIC6.43□□□□□ -1.38
SOX4Q06945 SHQ1P1-201ENST00000437111 1544 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.43□□□□□ -1.38
SOX4Q06945 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SOX4Q06945 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms