Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.2□□□□□ -1.74
COL6A3P12111 AL162574.1-201ENST00000615702 950 ntBASIC4.2□□□□□ -1.74
COL6A3P12111 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A3P12111 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.2□□□□□ -1.74
COL6A3P12111 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL6A3P12111 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A3P12111 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC4.2□□□□□ -1.74
COL6A3P12111 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A3P12111 AC139426.3-201ENST00000605648 2059 ntBASIC4.2□□□□□ -1.74
COL6A3P12111 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A3P12111 AC073063.1-201ENST00000434352 607 ntBASIC4.2□□□□□ -1.74
COL6A3P12111 HMGB1P18-201ENST00000438801 619 ntBASIC4.2□□□□□ -1.74
COL6A3P12111 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.2□□□□□ -1.74
COL6A3P12111 RAB28P3-201ENST00000448325 597 ntBASIC4.2□□□□□ -1.74
COL6A3P12111 AC093755.1-201ENST00000512950 1023 ntBASIC4.2□□□□□ -1.74
COL6A3P12111 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.2□□□□□ -1.74
COL6A3P12111 AC005618.4-201ENST00000625053 554 ntBASIC4.2□□□□□ -1.74
COL6A3P12111 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A3P12111 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A3P12111 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC4.2□□□□□ -1.74
COL6A3P12111 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
COL6A3P12111 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A3P12111 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL6A3P12111 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL6A3P12111 AC013429.2-201ENST00000418798 781 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 AL358472.1-201ENST00000431295 329 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 MTND2P40-201ENST00000436718 841 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC4.19□□□□□ -1.74
COL6A3P12111 AC010342.1-201ENST00000514047 877 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.19□□□□□ -1.74
COL6A3P12111 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.19□□□□□ -1.74
COL6A3P12111 AC091544.4-201ENST00000555268 342 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
COL6A3P12111 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.19□□□□□ -1.74
COL6A3P12111 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC4.19□□□□□ -1.74
COL6A3P12111 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 HMGB3P9-201ENST00000441799 583 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.19□□□□□ -1.74
COL6A3P12111 AC112503.1-201ENST00000608436 391 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC4.19□□□□□ -1.74
COL6A3P12111 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
COL6A3P12111 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
COL6A3P12111 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 AL136164.3-201ENST00000624429 3978 ntBASIC4.19□□□□□ -1.74
COL6A3P12111 MIGA1-202ENST00000443751 6409 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.19□□□□□ -1.74
COL6A3P12111 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A3P12111 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC4.18□□□□□ -1.74
COL6A3P12111 XGY1-201ENST00000381172 446 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 AC104333.2-201ENST00000422630 192 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 RNU1-41P-201ENST00000516161 162 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 RNU1-48P-201ENST00000516400 162 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 ZNF826P-207ENST00000622273 1910 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.18□□□□□ -1.74
COL6A3P12111 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.18□□□□□ -1.74
COL6A3P12111 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
COL6A3P12111 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A3P12111 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 UBE2V1P1-201ENST00000430836 445 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.18□□□□□ -1.74
COL6A3P12111 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 AL451007.1-201ENST00000595491 289 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A3P12111 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A3P12111 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A3P12111 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A3P12111 AL669831.5-218ENST00000591702 1873 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A3P12111 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A3P12111 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC4.18□□□□□ -1.74
COL6A3P12111 SNORA54-201ENST00000384281 123 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 RPL32P28-201ENST00000443577 397 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.18□□□□□ -1.74
COL6A3P12111 AC092691.2-201ENST00000461787 803 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 AC080014.1-201ENST00000496877 1201 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 AC087276.1-201ENST00000529659 480 ntBASIC4.18□□□□□ -1.74
COL6A3P12111 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A3P12111 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
COL6A3P12111 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A3P12111 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms