Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RN7SKP276-201ENST00000516242 268 ntBASIC5.82□□□□□ -1.48
HLA-DOAP06340 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 AP006289.1-201ENST00000538089 277 ntBASIC5.82□□□□□ -1.48
HLA-DOAP06340 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 AC119751.7-201ENST00000600494 245 ntBASIC5.82□□□□□ -1.48
HLA-DOAP06340 AC124856.1-201ENST00000600819 896 ntBASIC5.82□□□□□ -1.48
HLA-DOAP06340 AC067838.1-201ENST00000606064 577 ntBASIC5.82□□□□□ -1.48
HLA-DOAP06340 RMST_10.1-201ENST00000616309 154 ntBASIC5.82□□□□□ -1.48
HLA-DOAP06340 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HLA-DOAP06340 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HLA-DOAP06340 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.82□□□□□ -1.48
HLA-DOAP06340 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 RNU5B-1-201ENST00000363286 116 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 AC007068.1-201ENST00000396690 844 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 SFR1P1-201ENST00000403720 688 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 FAR2P2-201ENST00000413041 594 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 TBCAP2-201ENST00000416175 326 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 BX510359.2-201ENST00000417920 305 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 FAR2P4-202ENST00000425399 584 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 MTND1P20-201ENST00000430341 950 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 AC000041.1-201ENST00000439655 175 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 MTCYBP12-201ENST00000440559 1134 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 AC011753.3-201ENST00000443436 406 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 LAMTOR3P2-201ENST00000504479 232 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 AC079075.1-201ENST00000559543 878 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 RN7SL622P-201ENST00000585292 275 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 AC013562.2-201ENST00000611632 603 ntBASIC5.81□□□□□ -1.48
HLA-DOAP06340 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.81□□□□□ -1.48
HLA-DOAP06340 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HLA-DOAP06340 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC008079.2-201ENST00000623543 20396 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC063976.2-201ENST00000425667 3556 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 NCLP2-201ENST00000416078 1462 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC079741.1-201ENST00000321498 212 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 RNU4-68P-201ENST00000364314 141 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC008173.1-201ENST00000418901 264 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 NIPA2P1-201ENST00000426223 976 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC069540.1-201ENST00000446320 988 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AL133217.1-201ENST00000450980 425 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 NDUFA12P1-201ENST00000455914 406 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 RAP1BP2-201ENST00000478270 544 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 TPT1P3-201ENST00000492841 512 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 ENPP7P9-201ENST00000514456 627 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 OR5AN2P-201ENST00000534535 896 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC109446.2-201ENST00000567872 497 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC069366.1-201ENST00000583159 838 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms