Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC099654.2-201ENST00000433031 1980 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 USP9YP4-201ENST00000424401 1745 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 CYP1D1P-201ENST00000416662 1433 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 RN7SKP103-201ENST00000363848 320 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 BMS1P3-201ENST00000372011 932 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 LRRC37BP1-201ENST00000398851 714 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 RPL23AP59-201ENST00000399415 461 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC234782.4-201ENST00000417646 1048 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 OR6C64P-201ENST00000419708 825 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC104837.2-201ENST00000427236 424 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AL450263.2-201ENST00000439400 589 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 MTND6P18-201ENST00000439477 513 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 GEMIN8P3-201ENST00000445417 720 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 AL031584.1-201ENST00000447169 754 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 RPL7P16-201ENST00000479738 738 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC092902.1-201ENST00000486999 259 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC104629.1-201ENST00000494226 508 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 MRPS33P2-201ENST00000507850 322 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 BTF3P13-201ENST00000513224 490 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC083923.1-201ENST00000523708 376 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC021006.3-201ENST00000530771 192 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 ATP5F1P7-201ENST00000567330 760 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 TVP23CP2-201ENST00000571473 623 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 MIR4716-201ENST00000579628 84 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AP005262.1-201ENST00000582646 997 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC004948.1-201ENST00000609858 672 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC018926.1-201ENST00000616335 435 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 AC087385.3-201ENST00000620477 187 ntBASIC5.09□□□□□ -1.59
VPS28Q9UK41 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS28Q9UK41 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS28Q9UK41 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
VPS28Q9UK41 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.09□□□□□ -1.6
VPS28Q9UK41 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.09□□□□□ -1.6
VPS28Q9UK41 AC022031.1-201ENST00000585985 2593 ntBASIC5.09□□□□□ -1.6
VPS28Q9UK41 ECM1P2-201ENST00000503354 1577 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AP000542.2-201ENST00000623199 6179 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 ENSAP3-201ENST00000312710 333 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC013442.1-201ENST00000397347 228 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 MIR937-201ENST00000401271 86 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 EIF4A1P3-201ENST00000411521 244 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC012519.1-201ENST00000424588 610 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 RPL7P11-201ENST00000437586 658 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 ACTR3P2-201ENST00000439585 1257 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AL158053.1-201ENST00000441503 453 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AL691482.1-201ENST00000453255 87 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 SBDSP1-204ENST00000453858 737 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 RPS3AP53-201ENST00000454716 778 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS28Q9UK41 APOOP2-201ENST00000461561 539 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 OR52A4P-201ENST00000472867 958 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 AC083982.1-201ENST00000485679 344 ntBASIC5.08□□□□□ -1.6
VPS28Q9UK41 TPT1P3-201ENST00000492841 512 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms