Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC008549.2-201ENST00000333482 706 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 RNU4-44P-201ENST00000363050 141 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 RNU5B-4P-201ENST00000363508 111 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AP002784.2-201ENST00000397300 549 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 VDAC2P1-201ENST00000399358 958 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AL357515.1-201ENST00000402967 542 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 HMGB3P18-201ENST00000406327 590 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC105402.1-201ENST00000413336 545 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC093655.2-201ENST00000425735 631 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 RPS27P18-201ENST00000431701 247 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 YWHAZP2-201ENST00000440317 728 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 RPL6P5-201ENST00000445678 828 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AL096803.2-201ENST00000450032 677 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 RPS17P11-201ENST00000474297 293 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 RN7SL808P-201ENST00000496066 299 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC108471.1-201ENST00000513977 287 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC024940.3-201ENST00000538551 316 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 NPM1P47-201ENST00000560843 856 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC104687.2-201ENST00000604442 342 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC090525.3-201ENST00000605601 189 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC027449.1-201ENST00000608890 407 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC090527.3-201ENST00000619041 548 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC007342.8-201ENST00000623278 678 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC090772.4-201ENST00000623599 362 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 OR4G3P-201ENST00000633500 913 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 AC132825.7-201ENST00000638744 335 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NKX3-1Q99801 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NKX3-1Q99801 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 RNA5SP183-201ENST00000362452 119 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 NUDT19P3-201ENST00000404698 555 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 RN7SKP273-201ENST00000411392 314 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 HMGB3P31-201ENST00000413333 595 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 RPL23AP27-201ENST00000415161 451 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 LINC01881-201ENST00000416103 412 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 TMBIM7P-201ENST00000418074 855 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 EIF4HP2-201ENST00000424380 563 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 RPS7P2-201ENST00000435134 607 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 snoU13.20-201ENST00000459180 104 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 RN7SKP46-201ENST00000515942 234 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 AP003717.3-201ENST00000544832 1180 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.24□□□□□ -1.73
NKX3-1Q99801 MIR548Y-201ENST00000582739 110 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 MIR4760-201ENST00000585040 80 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC124856.1-201ENST00000600819 896 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 AC079610.2-201ENST00000604818 690 ntBASIC4.24□□□□□ -1.73
NKX3-1Q99801 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms