Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NIP7P2-201ENST00000485801 544 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 AK3P4-201ENST00000504283 583 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 AC093824.1-201ENST00000508796 343 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 RNA5SP49-201ENST00000516450 115 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.04□□□□□ -1.76
FOXA1P55317 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.04□□□□□ -1.76
FOXA1P55317 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 AC068020.1-201ENST00000594215 661 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.04□□□□□ -1.76
FOXA1P55317 AC020915.5-201ENST00000596836 964 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.04□□□□□ -1.76
FOXA1P55317 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 AL035461.2-201ENST00000619201 524 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 AP001005.3-201ENST00000622049 129 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.04□□□□□ -1.76
FOXA1P55317 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 AC097504.1-201ENST00000515103 2415 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
FOXA1P55317 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 HSPD1P11-201ENST00000508643 1702 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 RNU6-398P-201ENST00000384143 109 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.03□□□□□ -1.76
FOXA1P55317 RPL37P18-201ENST00000411602 243 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 AL139128.1-201ENST00000413921 941 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 AC011998.1-201ENST00000433403 117 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 AL450263.2-201ENST00000439400 589 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.03□□□□□ -1.76
FOXA1P55317 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 AF213884.1-201ENST00000488102 463 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.03□□□□□ -1.76
FOXA1P55317 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA1P55317 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA1P55317 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 OR7E10P-201ENST00000526420 991 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA1P55317 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA1P55317 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.03□□□□□ -1.76
FOXA1P55317 AC022882.1-201ENST00000532142 501 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA1P55317 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA1P55317 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA1P55317 MIR4715-201ENST00000584117 79 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC4.03□□□□□ -1.76
FOXA1P55317 RNU6-84P-201ENST00000607737 102 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 AC233309.1-201ENST00000619522 751 ntBASIC4.03□□□□□ -1.76
FOXA1P55317 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
FOXA1P55317 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.77
FOXA1P55317 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA1P55317 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA1P55317 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA1P55317 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA1P55317 AL672167.2-201ENST00000377164 879 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
FOXA1P55317 RPS3AP23-201ENST00000401762 784 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 SNORA3C-201ENST00000408792 125 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 JKAMPP1-201ENST00000413804 919 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 RPL6P29-201ENST00000414863 865 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 TRIM60P17-201ENST00000415181 719 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 AC119751.6-201ENST00000416712 186 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 MTCO1P54-201ENST00000430139 712 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 BX119904.1-201ENST00000432026 348 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 RPS3AP54-201ENST00000435535 734 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA1P55317 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA1P55317 HMGB3P22-202ENST00000451823 572 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 RPL7P32-201ENST00000457119 744 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 RPS26P15-201ENST00000488067 348 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 RN7SL810P-201ENST00000493031 276 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 AC025674.1-201ENST00000507074 324 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AL592156.1-201ENST00000508758 304 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.02□□□□□ -1.77
FOXA1P55317 KRT19P6-201ENST00000510983 209 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 IGKV2-38-201ENST00000517443 247 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AC021733.2-201ENST00000518830 497 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms