Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RPS26P2-201ENST00000440331 348 ntBASIC4.42□□□□□ -1.7
SOX3P41225 RPL36AP15-201ENST00000444514 266 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.42□□□□□ -1.7
SOX3P41225 HMGB1P5-202ENST00000451497 985 ntBASIC4.42□□□□□ -1.7
SOX3P41225 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 RPS29P22-201ENST00000472363 168 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.42□□□□□ -1.7
SOX3P41225 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 DEFB109F-201ENST00000491870 277 ntBASIC4.42□□□□□ -1.7
SOX3P41225 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 SCARNA22-201ENST00000503991 125 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.42□□□□□ -1.7
SOX3P41225 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.42□□□□□ -1.7
SOX3P41225 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.42□□□□□ -1.7
SOX3P41225 RNU6-334P-201ENST00000517072 102 ntBASIC4.42□□□□□ -1.7
SOX3P41225 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.42□□□□□ -1.7
SOX3P41225 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.42□□□□□ -1.7
SOX3P41225 RN7SL802P-201ENST00000577858 299 ntBASIC4.42□□□□□ -1.7
SOX3P41225 MIR5699-201ENST00000578903 90 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AC006116.7-201ENST00000590141 756 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AC104785.1-201ENST00000603220 588 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AC005034.4-201ENST00000603612 899 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AC098935.2-201ENST00000604222 466 ntBASIC4.42□□□□□ -1.7
SOX3P41225 SUMO2P14-201ENST00000604488 293 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AL139022.2-201ENST00000606934 443 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AL135786.2-201ENST00000608422 615 ntBASIC4.42□□□□□ -1.7
SOX3P41225 AP000240.1-201ENST00000609910 452 ntBASIC4.42□□□□□ -1.7
SOX3P41225 MIR6853-201ENST00000619642 74 ntBASIC4.42□□□□□ -1.7
SOX3P41225 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 AC012414.7-202ENST00000622705 1090 ntBASIC4.42□□□□□ -1.7
SOX3P41225 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.42□□□□□ -1.7
SOX3P41225 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SOX3P41225 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
SOX3P41225 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.42□□□□□ -1.7
SOX3P41225 AL121950.1-201ENST00000624993 2077 ntBASIC4.42□□□□□ -1.7
SOX3P41225 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.42□□□□□ -1.7
SOX3P41225 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 AC012618.3-205ENST00000637896 1496 ntBASIC4.42□□□□□ -1.7
SOX3P41225 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SOX3P41225 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.42□□□□□ -1.7
SOX3P41225 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.41□□□□□ -1.7
SOX3P41225 AC010928.1-201ENST00000592477 1447 ntBASIC4.41□□□□□ -1.7
SOX3P41225 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 AL590240.1-201ENST00000334118 313 ntBASIC4.41□□□□□ -1.7
SOX3P41225 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SOX3P41225 RN7SKP115-201ENST00000363177 317 ntBASIC4.41□□□□□ -1.7
SOX3P41225 MIR298-201ENST00000401212 88 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.41□□□□□ -1.7
SOX3P41225 AL590139.1-201ENST00000416267 400 ntBASIC4.41□□□□□ -1.7
SOX3P41225 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AL451139.1-201ENST00000434718 346 ntBASIC4.41□□□□□ -1.7
SOX3P41225 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.41□□□□□ -1.7
SOX3P41225 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.41□□□□□ -1.7
SOX3P41225 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 MRPL48P1-201ENST00000445390 636 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC073264.2-201ENST00000448886 166 ntBASIC4.41□□□□□ -1.7
SOX3P41225 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 RPL23AP37-201ENST00000479658 549 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC008897.1-201ENST00000494006 347 ntBASIC4.41□□□□□ -1.7
SOX3P41225 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
SOX3P41225 AC091868.1-201ENST00000508746 304 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC021146.3-201ENST00000511911 260 ntBASIC4.41□□□□□ -1.7
SOX3P41225 TCP11X3P-202ENST00000514289 1254 ntBASIC4.41□□□□□ -1.7
SOX3P41225 RNA5SP228-201ENST00000516232 133 ntBASIC4.41□□□□□ -1.7
SOX3P41225 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 AP000859.1-201ENST00000525536 307 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX3P41225 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 AC093249.4-201ENST00000564755 259 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.41□□□□□ -1.7
SOX3P41225 RN7SL52P-201ENST00000584271 284 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC133794.1-201ENST00000602731 914 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC110792.4-201ENST00000609843 298 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AL049777.1-201ENST00000622740 518 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC015804.1-201ENST00000622935 435 ntBASIC4.41□□□□□ -1.7
SOX3P41225 AC005086.4-201ENST00000623065 213 ntBASIC4.41□□□□□ -1.7
SOX3P41225 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX3P41225 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX3P41225 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX3P41225 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.41□□□□□ -1.7
SOX3P41225 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SOX3P41225 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms