Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
CLDN3O15551 AC005229.3-201ENST00000603438 323 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 AC020634.1-201ENST00000608701 549 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 AC006065.6-201ENST00000625201 545 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 OR2L1P-202ENST00000641567 1023 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CLDN3O15551 AC015813.6-201ENST00000624409 5808 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CLDN3O15551 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CLDN3O15551 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CLDN3O15551 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.89□□□□□ -1.63
CLDN3O15551 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CLDN3O15551 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.89□□□□□ -1.63
CLDN3O15551 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.89□□□□□ -1.63
CLDN3O15551 NXPH1-205ENST00000602349 1953 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CLDN3O15551 DDX18P3-201ENST00000404856 2007 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
CLDN3O15551 IGKV7-3-201ENST00000357453 298 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 MIR195-201ENST00000385194 87 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.89□□□□□ -1.63
CLDN3O15551 RPL23AP25-201ENST00000430973 463 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.89□□□□□ -1.63
CLDN3O15551 VN1R48P-201ENST00000448149 1036 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.89□□□□□ -1.63
CLDN3O15551 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.89□□□□□ -1.63
CLDN3O15551 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLDN3O15551 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
CLDN3O15551 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.89□□□□□ -1.63
CLDN3O15551 DEFB109F-201ENST00000491870 277 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 RNA5SP446-201ENST00000515955 82 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.89□□□□□ -1.63
CLDN3O15551 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.89□□□□□ -1.63
CLDN3O15551 C1GALT1P3-201ENST00000522049 819 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 AC009643.1-201ENST00000532030 391 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.89□□□□□ -1.63
CLDN3O15551 AP001160.4-201ENST00000596971 382 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 AL356218.2-201ENST00000605264 187 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 AC091905.2-201ENST00000623143 306 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.89□□□□□ -1.63
CLDN3O15551 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLDN3O15551 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.89□□□□□ -1.63
CLDN3O15551 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLDN3O15551 AC010300.1-201ENST00000600671 5134 ntBASIC4.89□□□□□ -1.63
CLDN3O15551 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLDN3O15551 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.89□□□□□ -1.63
CLDN3O15551 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CLDN3O15551 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.88□□□□□ -1.63
CLDN3O15551 HSPD1P14-201ENST00000432666 1618 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLDN3O15551 U3.22-201ENST00000391120 215 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 RPL23AP59-201ENST00000399415 461 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 RN7SKP199-201ENST00000410325 305 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC016397.1-201ENST00000412463 242 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.88□□□□□ -1.63
CLDN3O15551 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.88□□□□□ -1.63
CLDN3O15551 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.88□□□□□ -1.63
CLDN3O15551 PPIAP13-201ENST00000434706 478 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.88□□□□□ -1.63
CLDN3O15551 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.88□□□□□ -1.63
CLDN3O15551 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.88□□□□□ -1.63
CLDN3O15551 AL354710.1-201ENST00000453641 246 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.88□□□□□ -1.63
CLDN3O15551 RPS27AP17-201ENST00000463344 455 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC053481.1-201ENST00000467217 306 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.88□□□□□ -1.63
CLDN3O15551 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
CLDN3O15551 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.88□□□□□ -1.63
CLDN3O15551 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.88□□□□□ -1.63
CLDN3O15551 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.88□□□□□ -1.63
CLDN3O15551 RNA5SP497-201ENST00000516081 97 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 IGLVIV-65-201ENST00000517313 360 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 MTCYBP19-201ENST00000517463 1124 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.88□□□□□ -1.63
CLDN3O15551 HIGD1AP5-201ENST00000529959 259 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.88□□□□□ -1.63
CLDN3O15551 MIR4277-201ENST00000578298 84 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.88□□□□□ -1.63
CLDN3O15551 BNIP3P7-201ENST00000605641 516 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC090948.1-201ENST00000607464 549 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC140113.4-201ENST00000622087 222 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC019080.5-201ENST00000624891 757 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.88□□□□□ -1.63
CLDN3O15551 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLDN3O15551 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.88□□□□□ -1.63
CLDN3O15551 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.88□□□□□ -1.63
CLDN3O15551 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.88□□□□□ -1.63
CLDN3O15551 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
CLDN3O15551 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.88□□□□□ -1.63
CLDN3O15551 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.87□□□□□ -1.63
CLDN3O15551 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CLDN3O15551 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CLDN3O15551 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLDN3O15551 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
CLDN3O15551 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CLDN3O15551 AC092435.4-201ENST00000623012 4159 ntBASIC4.87□□□□□ -1.63
CLDN3O15551 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLDN3O15551 RNU4-39P-201ENST00000362455 127 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms