Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC1.36□□□□□ -2.19
SYNE1Q8NF91 AP005262.1-201ENST00000582646 997 ntBASIC1.36□□□□□ -2.19
SYNE1Q8NF91 MIR3936-201ENST00000584304 110 ntBASIC1.36□□□□□ -2.19
SYNE1Q8NF91 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
SYNE1Q8NF91 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
SYNE1Q8NF91 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
SYNE1Q8NF91 AC139426.3-201ENST00000605648 2059 ntBASIC1.36□□□□□ -2.19
SYNE1Q8NF91 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC092435.4-201ENST00000623012 4159 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AL607077.1-201ENST00000401718 499 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AL035079.1-201ENST00000405210 287 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RN7SKP33-201ENST00000410942 340 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CDY14P-201ENST00000431260 1014 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CDY12P-201ENST00000440679 1015 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CDY13P-201ENST00000445813 1015 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CDY23P-201ENST00000451661 1014 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RPL7P32-201ENST00000457119 744 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC02471-203ENST00000641941 4752 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 TOPORSLP1-201ENST00000467693 2102 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 MIR331-201ENST00000362302 94 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RPL12P18-201ENST00000437175 325 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 ACTR3P2-201ENST00000439585 1257 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC087477.6-201ENST00000559595 843 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 HNRNPCP4-201ENST00000571636 900 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AP005901.4-201ENST00000577336 569 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC017104.4-201ENST00000636283 1592 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RPS26P8-201ENST00000393490 348 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 NDUFB4P4-201ENST00000404822 243 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 APOA2-207ENST00000470459 416 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RNU1-45P-201ENST00000517191 141 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CASP1-216ENST00000534497 825 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 BPIFA4P-203ENST00000603168 689 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 IGKV1OR2-118-201ENST00000603238 347 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 UBE2Q2P12-201ENST00000414573 204 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC104164.2-201ENST00000496953 495 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC064801.1-201ENST00000612025 407 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AL445487.1-201ENST00000415694 1580 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 SNORA70.6-201ENST00000383934 134 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 VTI1BP4-201ENST00000427516 527 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC007389.2-201ENST00000434630 306 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 MTND6P5-201ENST00000448266 512 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 SOD1P3-201ENST00000518682 454 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 RPL23AP53-201ENST00000521854 457 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC008739.3-201ENST00000603262 127 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
SYNE1Q8NF91 EIF4HP2-201ENST00000424380 563 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 NFYAP1-201ENST00000431953 972 ntBASIC1.35□□□□□ -2.19
SYNE1Q8NF91 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 141.3 ms