Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC017002.4-201ENST00000604721 1525 ntBASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 AC139713.2-214ENST00000642059 1811 ntBASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 NEAT1-202ENST00000501122 22743 ntBASIC4.85□□□□□ -1.63
HDDC3Q8N4P3 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 ADAM5-202ENST00000399789 1942 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC011447.7-201ENST00000624228 1590 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC083799.1-201ENST00000366451 910 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AL035696.2-201ENST00000407941 709 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC004690.1-201ENST00000418216 328 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 CHIAP3-201ENST00000423668 1133 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 NPM1P24-201ENST00000428039 894 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC004975.1-201ENST00000428733 208 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 GEMIN8P3-201ENST00000445417 720 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 RSL24D1P2-201ENST00000445584 366 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 EIF2S2P2-201ENST00000447161 982 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 HMGB1P26-201ENST00000452520 628 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 Z95152.1-201ENST00000453556 656 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 RPL7P48-201ENST00000461513 746 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC013356.1-201ENST00000489027 564 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 SCARNA22-201ENST00000503991 125 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC073358.1-201ENST00000505671 684 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 PGBD4P4-201ENST00000509673 613 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC026688.1-201ENST00000520639 1168 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 NPM1P6-201ENST00000521088 871 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AL049870.4-201ENST00000555741 486 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC103792.1-201ENST00000603591 919 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC007342.8-201ENST00000623278 678 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 AC068724.3-201ENST00000625906 87 ntBASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.84□□□□□ -1.63
HDDC3Q8N4P3 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
HDDC3Q8N4P3 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
HDDC3Q8N4P3 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.64
HDDC3Q8N4P3 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 CYP1D1P-201ENST00000416662 1433 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 U3.22-201ENST00000391120 215 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC105402.1-201ENST00000413336 545 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 FABP7P1-201ENST00000424004 391 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC092162.1-201ENST00000432828 434 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC114878.1-201ENST00000441166 358 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 HMGB3P9-201ENST00000441799 583 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 CYCSP24-201ENST00000445119 316 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 OR52A4P-201ENST00000472867 958 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 RNU6-513P-201ENST00000516104 104 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 RNU2-30P-201ENST00000516209 141 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 RNU6-1004P-201ENST00000516584 111 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 Y_RNA.719-201ENST00000517156 106 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 PDCD5P1-201ENST00000543528 309 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC012414.2-201ENST00000559474 187 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC110743.1-201ENST00000584870 478 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC007423.1-201ENST00000605009 627 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC131238.1-201ENST00000617135 328 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms