Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AC010201.1-201ENST00000605051 540 ntBASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 AC140479.4-205ENST00000636339 820 ntBASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 AC233263.6-201ENST00000631132 1963 ntBASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 AL136981.1-203ENST00000451452 3844 ntBASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
TRIM35Q9UPQ4 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 BRD7P1-201ENST00000557705 1915 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC095038.1-201ENST00000429248 1591 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 Y_RNA.14-201ENST00000362415 103 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 RNA5SP152-201ENST00000365184 110 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 Y_RNA.464-201ENST00000384282 110 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 RNU6-886P-201ENST00000384319 105 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 Y_RNA.482-201ENST00000384377 111 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AL034403.1-201ENST00000399414 885 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 TANK-203ENST00000402568 878 ntTSL 5 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 MIR320C1-201ENST00000408566 88 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 RNU6-101P-201ENST00000410323 104 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 Y_RNA.646-201ENST00000410980 101 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 MYL6P3-201ENST00000436904 432 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC105402.2-201ENST00000438503 358 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 SUMO2P10-201ENST00000452006 288 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 RPL21P99-201ENST00000480369 423 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 SLC25A15P5-201ENST00000508033 253 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 RNA5SP135-201ENST00000517019 125 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 PHBP2-201ENST00000532859 806 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC125232.2-201ENST00000592457 143 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AL591167.1-201ENST00000607321 456 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 5S_rRNA.23-201ENST00000612086 102 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC130324.3-201ENST00000614165 542 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 AC098657.3-201ENST00000620434 263 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 VPS35P1-201ENST00000563400 1518 ntBASIC9.05□□□□□ -0.96
TRIM35Q9UPQ4 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 CNTRL-212ENST00000613863 2418 ntTSL 5 BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 AL034417.4-202ENST00000642135 2236 ntBASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 AC007938.1-201ENST00000562524 2902 ntBASIC9.04□□□□□ -0.96
TRIM35Q9UPQ4 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms