Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR129-1-201ENST00000384972 72 ntBASIC3.99□□□□□ -1.77
USF1P22415 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 ATG4AP1-201ENST00000416893 538 ntBASIC3.99□□□□□ -1.77
USF1P22415 AC009302.1-201ENST00000417147 390 ntBASIC3.99□□□□□ -1.77
USF1P22415 LINC00993-201ENST00000420453 540 ntBASIC3.99□□□□□ -1.77
USF1P22415 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.99□□□□□ -1.77
USF1P22415 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 CASP3P1-201ENST00000446037 609 ntBASIC3.99□□□□□ -1.77
USF1P22415 CALM1P2-201ENST00000452941 448 ntBASIC3.99□□□□□ -1.77
USF1P22415 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC3.99□□□□□ -1.77
USF1P22415 RPS17P2-201ENST00000461663 408 ntBASIC3.99□□□□□ -1.77
USF1P22415 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 STRADBP1-201ENST00000478954 1281 ntBASIC3.99□□□□□ -1.77
USF1P22415 ARL4AP1-201ENST00000503220 705 ntBASIC3.99□□□□□ -1.77
USF1P22415 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC3.99□□□□□ -1.77
USF1P22415 SEC11B-201ENST00000518383 499 ntBASIC3.99□□□□□ -1.77
USF1P22415 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC3.99□□□□□ -1.77
USF1P22415 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC3.99□□□□□ -1.77
USF1P22415 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.99□□□□□ -1.77
USF1P22415 RN7SL802P-201ENST00000577858 299 ntBASIC3.99□□□□□ -1.77
USF1P22415 AC069061.3-201ENST00000582254 823 ntBASIC3.99□□□□□ -1.77
USF1P22415 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 RPL12P25-202ENST00000598100 674 ntBASIC3.99□□□□□ -1.77
USF1P22415 AC002044.3-201ENST00000623314 541 ntBASIC3.99□□□□□ -1.77
USF1P22415 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 AL359922.3-201ENST00000624779 1670 ntBASIC3.99□□□□□ -1.77
USF1P22415 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 AC093535.2-201ENST00000624769 2326 ntBASIC3.99□□□□□ -1.77
USF1P22415 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.99□□□□□ -1.77
USF1P22415 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.99□□□□□ -1.77
USF1P22415 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 ACTR3BP5-201ENST00000448440 1479 ntBASIC3.98□□□□□ -1.77
USF1P22415 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.98□□□□□ -1.77
USF1P22415 AL592148.3-201ENST00000608771 2646 ntBASIC3.98□□□□□ -1.77
USF1P22415 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 MFSD8-220ENST00000641243 1422 ntBASIC3.98□□□□□ -1.77
USF1P22415 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 RNA5SP447-201ENST00000363749 119 ntBASIC3.98□□□□□ -1.77
USF1P22415 RN7SKP227-201ENST00000364445 330 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC019155.1-201ENST00000382242 574 ntBASIC3.98□□□□□ -1.77
USF1P22415 SNORD65-201ENST00000391079 73 ntBASIC3.98□□□□□ -1.77
USF1P22415 RNA5SP397-201ENST00000391323 118 ntBASIC3.98□□□□□ -1.77
USF1P22415 MAST4-207ENST00000407621 559 ntTSL 2 BASIC3.98□□□□□ -1.77
USF1P22415 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC3.98□□□□□ -1.77
USF1P22415 RN7SKP267-201ENST00000410381 285 ntBASIC3.98□□□□□ -1.77
USF1P22415 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC3.98□□□□□ -1.77
USF1P22415 RPS17P8-201ENST00000434525 335 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC093716.1-201ENST00000435923 377 ntBASIC3.98□□□□□ -1.77
USF1P22415 CYCSP11-201ENST00000436426 315 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC073052.1-201ENST00000440417 714 ntBASIC3.98□□□□□ -1.77
USF1P22415 FHP1-201ENST00000442741 703 ntBASIC3.98□□□□□ -1.77
USF1P22415 MRPL48P1-201ENST00000445390 636 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC099063.2-201ENST00000446360 662 ntBASIC3.98□□□□□ -1.77
USF1P22415 EIF2S2P2-201ENST00000447161 982 ntBASIC3.98□□□□□ -1.77
USF1P22415 ATP5A1P7-201ENST00000453978 1279 ntBASIC3.98□□□□□ -1.77
USF1P22415 CYCSP34-201ENST00000458172 304 ntBASIC3.98□□□□□ -1.77
USF1P22415 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC3.98□□□□□ -1.77
USF1P22415 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC3.98□□□□□ -1.77
USF1P22415 AC103987.1-201ENST00000473394 348 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC013356.1-201ENST00000489027 564 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC020890.1-201ENST00000491837 504 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC3.98□□□□□ -1.77
USF1P22415 AC147055.1-201ENST00000509261 750 ntBASIC3.98□□□□□ -1.77
USF1P22415 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC117525.1-201ENST00000515228 503 ntBASIC3.98□□□□□ -1.77
USF1P22415 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.98□□□□□ -1.77
USF1P22415 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC3.98□□□□□ -1.77
USF1P22415 AC005868.1-201ENST00000536421 331 ntBASIC3.98□□□□□ -1.77
USF1P22415 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.98□□□□□ -1.77
USF1P22415 HMGB3P26-201ENST00000560051 582 ntBASIC3.98□□□□□ -1.77
USF1P22415 CYCSP40-201ENST00000575927 294 ntBASIC3.98□□□□□ -1.77
USF1P22415 AL020997.2-201ENST00000602607 184 ntBASIC3.98□□□□□ -1.77
USF1P22415 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.98□□□□□ -1.77
USF1P22415 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 AC092653.1-201ENST00000608509 531 ntBASIC3.98□□□□□ -1.77
USF1P22415 RNF123-214ENST00000629802 207 ntTSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 MIR6830-201ENST00000636015 70 ntBASIC3.98□□□□□ -1.77
USF1P22415 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
USF1P22415 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 AC087565.3-202ENST00000642085 1603 ntBASIC3.98□□□□□ -1.77
USF1P22415 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USF1P22415 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC3.98□□□□□ -1.77
USF1P22415 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.98□□□□□ -1.77
USF1P22415 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms