Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A3P12111 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 AC015912.2-201ENST00000571053 181 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL6A3P12111 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 FTLP6-201ENST00000355274 422 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 RNA5SP241-201ENST00000391326 114 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A3P12111 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A3P12111 AC087650.1-201ENST00000431445 468 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A3P12111 AC018635.1-201ENST00000468292 1030 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 AC021193.1-201ENST00000511607 420 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A3P12111 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.28□□□□□ -1.72
COL6A3P12111 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
COL6A3P12111 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 EOGT-210ENST00000615922 1931 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL6A3P12111 LINC02035-201ENST00000610128 5476 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 ATP5A1P2-201ENST00000412323 255 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC4.27□□□□□ -1.73
COL6A3P12111 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.27□□□□□ -1.73
COL6A3P12111 AC006077.1-201ENST00000604746 343 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 AL645927.2-201ENST00000618350 349 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.27□□□□□ -1.73
COL6A3P12111 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 GNG5P1-201ENST00000255500 204 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 U1.1-201ENST00000384101 164 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 BX276092.4-201ENST00000452056 248 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.27□□□□□ -1.73
COL6A3P12111 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 EIF5A2P1-201ENST00000564027 460 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 AC006386.2-201ENST00000624491 75 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 AC012005.1-201ENST00000624575 75 ntBASIC4.27□□□□□ -1.73
COL6A3P12111 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A3P12111 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL6A3P12111 RNA5SP374-201ENST00000362939 125 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.26□□□□□ -1.73
COL6A3P12111 RPL12P9-201ENST00000412942 488 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 DPY19L1P2-201ENST00000426647 915 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 AL590399.2-201ENST00000427536 309 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 RPS3AP6-201ENST00000484430 795 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 AC005183.1-201ENST00000603687 1979 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
COL6A3P12111 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A3P12111 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A3P12111 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.26□□□□□ -1.73
COL6A3P12111 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
COL6A3P12111 NACAP7-201ENST00000407371 609 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A3P12111 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A3P12111 AC010374.1-201ENST00000503762 1237 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 AC027176.2-201ENST00000559166 746 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 AL031595.3-201ENST00000624919 14262 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.26□□□□□ -1.73
COL6A3P12111 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.26□□□□□ -1.73
COL6A3P12111 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
COL6A3P12111 RNA5SP151-201ENST00000365632 117 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A3P12111 CYCSP53-201ENST00000455540 265 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 MYL12BP2-201ENST00000503948 512 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A3P12111 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A3P12111 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A3P12111 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A3P12111 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms