Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RN7SL812P-201ENST00000493791 279 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.64□□□□□ -1.83
SDCBPO00560 AC108145.1-201ENST00000503770 153 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.64□□□□□ -1.83
SDCBPO00560 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.64□□□□□ -1.83
SDCBPO00560 ATP1B1P1-201ENST00000509767 915 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 HMGB3P13-201ENST00000511263 607 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 AF186190.1-201ENST00000517470 480 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.64□□□□□ -1.83
SDCBPO00560 AL352979.3-201ENST00000553515 247 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 MEG8-217ENST00000556637 924 ntTSL 5 BASIC3.64□□□□□ -1.83
SDCBPO00560 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC3.64□□□□□ -1.83
SDCBPO00560 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.64□□□□□ -1.83
SDCBPO00560 AC024940.4-201ENST00000605507 246 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 AC100847.1-201ENST00000611316 481 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.64□□□□□ -1.83
SDCBPO00560 FP325313.1-201ENST00000638228 703 ntBASIC3.64□□□□□ -1.83
SDCBPO00560 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SDCBPO00560 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.64□□□□□ -1.83
SDCBPO00560 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.64□□□□□ -1.83
SDCBPO00560 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
SDCBPO00560 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
SDCBPO00560 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
SDCBPO00560 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SDCBPO00560 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SDCBPO00560 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.63□□□□□ -1.83
SDCBPO00560 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SDCBPO00560 SNORA79B-201ENST00000410557 148 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 RNA5SP39-201ENST00000411245 120 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AL161631.1-201ENST00000417933 486 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 RPL7AP25-201ENST00000423357 805 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 BRWD1P3-201ENST00000428816 390 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.63□□□□□ -1.83
SDCBPO00560 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC3.63□□□□□ -1.83
SDCBPO00560 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 PTMAP3-201ENST00000447474 330 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC3.63□□□□□ -1.83
SDCBPO00560 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 RPL21P126-201ENST00000470049 478 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 RN7SL585P-201ENST00000470538 280 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AC008410.1-201ENST00000483777 339 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 PPM1AP1-201ENST00000502740 1135 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AC139783.2-201ENST00000504847 1145 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC3.63□□□□□ -1.83
SDCBPO00560 AC025554.1-201ENST00000505641 188 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.63□□□□□ -1.83
SDCBPO00560 RPS27AP18-201ENST00000515536 459 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.63□□□□□ -1.83
SDCBPO00560 IGHV3-63-201ENST00000518422 341 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC3.63□□□□□ -1.83
SDCBPO00560 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.63□□□□□ -1.83
SDCBPO00560 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.63□□□□□ -1.83
SDCBPO00560 MIR6780A-201ENST00000615089 68 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 MIR6891-201ENST00000618788 93 ntBASIC3.63□□□□□ -1.83
SDCBPO00560 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.63□□□□□ -1.83
SDCBPO00560 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SDCBPO00560 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
SDCBPO00560 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SDCBPO00560 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDCBPO00560 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SDCBPO00560 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.62□□□□□ -1.83
SDCBPO00560 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SDCBPO00560 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SDCBPO00560 DHX40P1-201ENST00000588725 1412 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDCBPO00560 AL592148.3-201ENST00000608771 2646 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.62□□□□□ -1.83
SDCBPO00560 OR10J6P-201ENST00000289731 930 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 OR52B1P-201ENST00000316506 909 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.62□□□□□ -1.83
SDCBPO00560 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
SDCBPO00560 SNORA68.2-201ENST00000391263 128 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 RPS16P5-201ENST00000406501 404 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 RNA5SP306-201ENST00000411087 107 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.62□□□□□ -1.83
SDCBPO00560 AC019050.1-201ENST00000418508 492 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 RBMY1KP-201ENST00000423480 476 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 BX119904.1-201ENST00000432026 348 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 AL132765.1-201ENST00000434165 553 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.62□□□□□ -1.83
SDCBPO00560 HMGB3P9-201ENST00000441799 583 ntBASIC3.62□□□□□ -1.83
SDCBPO00560 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms