Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC009237.13-201ENST00000603193 276 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC009163.6-201ENST00000612367 342 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC093783.1-201ENST00000612976 329 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC025574.2-201ENST00000615621 514 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC138907.10-201ENST00000623708 983 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 UGP2-231ENST00000627474 264 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 MRE11P1-201ENST00000464884 2127 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 NF1-214ENST00000490416 1329 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC005294.1-201ENST00000355509 281 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 Y_RNA.472-201ENST00000384322 102 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 SNORD116-12-201ENST00000384468 92 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AP000357.1-201ENST00000409926 1165 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 RNA5SP498-201ENST00000411342 120 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 VTA1P1-201ENST00000414044 866 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AL356320.2-201ENST00000417263 507 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 MTCYBP42-201ENST00000444653 1130 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 HMGB3P6-201ENST00000444896 598 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 FAR2P1-206ENST00000449736 709 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 CDC42P1-201ENST00000456658 548 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 RPL7P32-201ENST00000457119 744 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AP000797.2-201ENST00000475768 606 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 RPS18P6-201ENST00000476880 458 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC090638.1-201ENST00000498296 909 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC091515.1-201ENST00000548110 679 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 SS18L2P2-201ENST00000583960 235 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC007342.8-201ENST00000623278 678 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AL121594.5-201ENST00000631724 573 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 BX649567.1-201ENST00000642071 1134 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 CCT8P1-201ENST00000413611 1657 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 SMG1P4-204ENST00000523028 4131 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AL450345.1-202ENST00000605741 3881 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 AC100757.1-201ENST00000616872 1835 ntBASIC5.2□□□□□ -1.58
VPS4AQ9UN37 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS4AQ9UN37 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC023421.1-201ENST00000590535 1785 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 524 ms