Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP41Q3LFD5 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
USP41Q3LFD5 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 U3.30-201ENST00000391308 210 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL357515.1-201ENST00000402967 542 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 U3.32-201ENST00000408116 212 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 RNA5SP345-201ENST00000410646 108 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 RSU1P3-201ENST00000412878 835 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL158050.1-201ENST00000416077 457 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL606495.1-201ENST00000422100 813 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC104333.2-201ENST00000422630 192 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC009480.2-201ENST00000422916 432 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL160175.1-201ENST00000428124 247 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC016831.4-201ENST00000438302 307 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 MTCYBP12-201ENST00000440559 1134 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC023512.1-201ENST00000444513 499 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC000111.2-201ENST00000448200 210 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 RPL7P55-201ENST00000450522 746 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 FCF1P6-201ENST00000456841 595 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 RPS17P2-201ENST00000461663 408 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 SCARNA22-201ENST00000503991 125 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 CDH12P2-201ENST00000504393 298 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 RNA5SP464-201ENST00000516251 108 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 RNU6-1308P-201ENST00000516817 103 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 RN7SKP92-201ENST00000517266 244 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 BUD31P1-201ENST00000521828 359 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 C1GALT1P3-201ENST00000522049 819 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 GLRXP2-201ENST00000555594 321 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 OR1AB1P-201ENST00000585564 761 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 AC133794.1-201ENST00000602731 914 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 RLIMP2-201ENST00000427891 1563 ntBASIC5.19□□□□□ -1.58
USP41Q3LFD5 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.19□□□□□ -1.58
USP41Q3LFD5 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP41Q3LFD5 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC010928.1-201ENST00000592477 1447 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 RNA5SP332-201ENST00000391063 115 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 VN1R37P-201ENST00000419096 748 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 VN1R42P-201ENST00000424651 344 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 RPL23AP4-201ENST00000427757 463 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 CLIC4P1-201ENST00000453177 535 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 snoU13.1-201ENST00000459157 104 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 RPL12P20-201ENST00000475538 479 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC119751.4-201ENST00000507498 357 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 HIGD1AP18-201ENST00000520730 278 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 MIR5096-201ENST00000583713 70 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC022726.1-201ENST00000587475 207 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC025175.1-201ENST00000606482 759 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC097504.2-201ENST00000608088 454 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC005156.1-201ENST00000613371 573 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC009269.6-201ENST00000621778 588 ntBASIC5.18□□□□□ -1.58
USP41Q3LFD5 AC068880.4-201ENST00000623082 495 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms