Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 VN1R42P-201ENST00000424651 344 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 BX323845.1-201ENST00000432417 179 ntBASIC5.39□□□□□ -1.55
BDNFP23560 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.39□□□□□ -1.55
BDNFP23560 AC074367.1-201ENST00000438685 1125 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 S100A11P1-201ENST00000477525 312 ntBASIC5.39□□□□□ -1.55
BDNFP23560 RN7SL244P-201ENST00000493405 297 ntBASIC5.39□□□□□ -1.55
BDNFP23560 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.39□□□□□ -1.55
BDNFP23560 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 RN7SKP96-201ENST00000516948 297 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AC083923.1-201ENST00000523708 376 ntBASIC5.39□□□□□ -1.55
BDNFP23560 OR5AZ1P-201ENST00000527448 943 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AP000676.2-201ENST00000529711 301 ntBASIC5.39□□□□□ -1.55
BDNFP23560 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.39□□□□□ -1.55
BDNFP23560 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.39□□□□□ -1.55
BDNFP23560 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.39□□□□□ -1.55
BDNFP23560 AL359219.2-201ENST00000555184 348 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC5.39□□□□□ -1.55
BDNFP23560 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 AC008536.1-201ENST00000602872 669 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AC010680.4-201ENST00000605334 543 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.39□□□□□ -1.55
BDNFP23560 AC091905.4-201ENST00000623432 202 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AL353662.3-201ENST00000625131 237 ntBASIC5.39□□□□□ -1.55
BDNFP23560 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.39□□□□□ -1.55
BDNFP23560 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.39□□□□□ -1.55
BDNFP23560 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.39□□□□□ -1.55
BDNFP23560 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.39□□□□□ -1.55
BDNFP23560 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.39□□□□□ -1.55
BDNFP23560 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
BDNFP23560 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.38□□□□□ -1.55
BDNFP23560 AL445487.1-201ENST00000415694 1580 ntBASIC5.38□□□□□ -1.55
BDNFP23560 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
BDNFP23560 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
BDNFP23560 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 OR14L1P-202ENST00000641545 3009 ntBASIC5.38□□□□□ -1.55
BDNFP23560 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
BDNFP23560 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 RNU6-1339P-201ENST00000363574 91 ntBASIC5.38□□□□□ -1.55
BDNFP23560 RN7SKP113-201ENST00000363891 295 ntBASIC5.38□□□□□ -1.55
BDNFP23560 SNORA66-201ENST00000384792 133 ntBASIC5.38□□□□□ -1.55
BDNFP23560 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
BDNFP23560 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 AL078599.1-201ENST00000402075 293 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AL390316.1-201ENST00000406279 553 ntBASIC5.38□□□□□ -1.55
BDNFP23560 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.38□□□□□ -1.55
BDNFP23560 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.38□□□□□ -1.55
BDNFP23560 AC008173.1-201ENST00000418901 264 ntBASIC5.38□□□□□ -1.55
BDNFP23560 MTATP6P11-201ENST00000428071 670 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 HMGB1P48-201ENST00000446155 598 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 TRY2P-201ENST00000448860 689 ntBASIC5.38□□□□□ -1.55
BDNFP23560 BX842559.2-201ENST00000451418 605 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 AC104689.1-201ENST00000473356 768 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC010350.1-201ENST00000504908 231 ntBASIC5.38□□□□□ -1.55
BDNFP23560 HPRT1P2-201ENST00000505250 544 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.38□□□□□ -1.55
BDNFP23560 COX6B1P5-201ENST00000509843 249 ntBASIC5.38□□□□□ -1.55
BDNFP23560 RNA5SP360-201ENST00000516555 118 ntBASIC5.38□□□□□ -1.55
BDNFP23560 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 PTP4A1P6-201ENST00000531034 478 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 OR7E128P-201ENST00000532736 1024 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 LSM3P2-201ENST00000551246 273 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.38□□□□□ -1.55
BDNFP23560 AC104229.1-201ENST00000561364 255 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.38□□□□□ -1.55
BDNFP23560 AC027216.1-201ENST00000577726 685 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC011840.5-201ENST00000582125 771 ntBASIC5.38□□□□□ -1.55
BDNFP23560 ELOCP28-201ENST00000590044 317 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.38□□□□□ -1.55
BDNFP23560 FRG1HP-204ENST00000617940 757 ntBASIC5.38□□□□□ -1.55
BDNFP23560 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.38□□□□□ -1.55
BDNFP23560 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
BDNFP23560 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 AC008432.1-201ENST00000615912 1320 ntBASIC5.38□□□□□ -1.55
BDNFP23560 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
BDNFP23560 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
BDNFP23560 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms