Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RPL12P28-201ENST00000430852 489 ntBASIC4.01□□□□□ -1.77
USF1P22415 MTND2P2-201ENST00000434633 945 ntBASIC4.01□□□□□ -1.77
USF1P22415 AC243772.1-201ENST00000451620 410 ntBASIC4.01□□□□□ -1.77
USF1P22415 RN7SL517P-201ENST00000462240 305 ntBASIC4.01□□□□□ -1.77
USF1P22415 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.01□□□□□ -1.77
USF1P22415 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.01□□□□□ -1.77
USF1P22415 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.01□□□□□ -1.77
USF1P22415 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.01□□□□□ -1.77
USF1P22415 RNU2-30P-201ENST00000516209 141 ntBASIC4.01□□□□□ -1.77
USF1P22415 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.01□□□□□ -1.77
USF1P22415 NPM1P6-201ENST00000521088 871 ntBASIC4.01□□□□□ -1.77
USF1P22415 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
USF1P22415 OR5M2P-201ENST00000529003 936 ntBASIC4.01□□□□□ -1.77
USF1P22415 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.01□□□□□ -1.77
USF1P22415 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.01□□□□□ -1.77
USF1P22415 AC084033.1-201ENST00000550830 633 ntBASIC4.01□□□□□ -1.77
USF1P22415 AL110118.1-201ENST00000553543 400 ntBASIC4.01□□□□□ -1.77
USF1P22415 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.01□□□□□ -1.77
USF1P22415 ATP5J2P6-201ENST00000565203 266 ntBASIC4.01□□□□□ -1.77
USF1P22415 SNORA74C-1-201ENST00000580726 201 ntBASIC4.01□□□□□ -1.77
USF1P22415 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.01□□□□□ -1.77
USF1P22415 AC034236.3-201ENST00000605999 461 ntBASIC4.01□□□□□ -1.77
USF1P22415 AL133370.2-201ENST00000619934 439 ntBASIC4.01□□□□□ -1.77
USF1P22415 AC007342.7-201ENST00000624610 2337 ntBASIC4.01□□□□□ -1.77
USF1P22415 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USF1P22415 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USF1P22415 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USF1P22415 AL592182.3-201ENST00000642132 3304 ntBASIC4.01□□□□□ -1.77
USF1P22415 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USF1P22415 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.01□□□□□ -1.77
USF1P22415 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USF1P22415 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4□□□□□ -1.77
USF1P22415 AC007382.1-201ENST00000624376 2618 ntBASIC4□□□□□ -1.77
USF1P22415 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
USF1P22415 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4□□□□□ -1.77
USF1P22415 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4□□□□□ -1.77
USF1P22415 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 OR10J6P-201ENST00000289731 930 ntBASIC4□□□□□ -1.77
USF1P22415 MT-TP-201ENST00000387461 68 ntBASIC4□□□□□ -1.77
USF1P22415 ATP5F1P2-201ENST00000398143 760 ntBASIC4□□□□□ -1.77
USF1P22415 RNA5SP345-201ENST00000410646 108 ntBASIC4□□□□□ -1.77
USF1P22415 TMBIM7P-201ENST00000418074 855 ntBASIC4□□□□□ -1.77
USF1P22415 QRSL1P2-201ENST00000418582 964 ntBASIC4□□□□□ -1.77
USF1P22415 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4□□□□□ -1.77
USF1P22415 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4□□□□□ -1.77
USF1P22415 RPL23AP1-201ENST00000428990 471 ntBASIC4□□□□□ -1.77
USF1P22415 AC073143.1-201ENST00000436316 395 ntBASIC4□□□□□ -1.77
USF1P22415 AC073587.1-201ENST00000447093 876 ntBASIC4□□□□□ -1.77
USF1P22415 AC000111.2-201ENST00000448200 210 ntBASIC4□□□□□ -1.77
USF1P22415 RPL31P20-201ENST00000449593 360 ntBASIC4□□□□□ -1.77
USF1P22415 AC009963.2-201ENST00000453431 138 ntBASIC4□□□□□ -1.77
USF1P22415 Z95152.1-201ENST00000453556 656 ntBASIC4□□□□□ -1.77
USF1P22415 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4□□□□□ -1.77
USF1P22415 C1DP3-201ENST00000455013 423 ntBASIC4□□□□□ -1.77
USF1P22415 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4□□□□□ -1.77
USF1P22415 AC112206.1-201ENST00000468416 477 ntBASIC4□□□□□ -1.77
USF1P22415 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4□□□□□ -1.77
USF1P22415 AC093840.1-201ENST00000511599 336 ntBASIC4□□□□□ -1.77
USF1P22415 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4□□□□□ -1.77
USF1P22415 RNA5SP392-201ENST00000516905 112 ntBASIC4□□□□□ -1.77
USF1P22415 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4□□□□□ -1.77
USF1P22415 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4□□□□□ -1.77
USF1P22415 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC4□□□□□ -1.77
USF1P22415 AC087888.1-201ENST00000550884 1254 ntBASIC4□□□□□ -1.77
USF1P22415 AL049839.1-201ENST00000556151 657 ntBASIC4□□□□□ -1.77
USF1P22415 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4□□□□□ -1.77
USF1P22415 AL356218.2-201ENST00000605264 187 ntBASIC4□□□□□ -1.77
USF1P22415 AL445423.1-201ENST00000609941 536 ntBASIC4□□□□□ -1.77
USF1P22415 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4□□□□□ -1.77
USF1P22415 MIR8069-1-201ENST00000616627 86 ntBASIC4□□□□□ -1.77
USF1P22415 MIR8069-2-201ENST00000621412 86 ntBASIC4□□□□□ -1.77
USF1P22415 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 AC027290.2-201ENST00000623210 18662 ntBASIC4□□□□□ -1.77
USF1P22415 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4□□□□□ -1.77
USF1P22415 AC139713.2-214ENST00000642059 1811 ntBASIC4□□□□□ -1.77
USF1P22415 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
USF1P22415 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 AL137100.1-201ENST00000556703 1620 ntBASIC3.99□□□□□ -1.77
USF1P22415 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 DDX18P5-201ENST00000534547 1306 ntBASIC3.99□□□□□ -1.77
USF1P22415 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 LINC01109-201ENST00000603837 3081 ntBASIC3.99□□□□□ -1.77
USF1P22415 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 AL442639.1-201ENST00000625030 1899 ntBASIC3.99□□□□□ -1.77
USF1P22415 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
USF1P22415 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 RNU6-1251P-201ENST00000364502 107 ntBASIC3.99□□□□□ -1.77
USF1P22415 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USF1P22415 AC068538.1-201ENST00000376856 336 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 178 ms