Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC095055.1-201ENST00000603472 1113 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 TAS2R6P-201ENST00000605022 826 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AP005137.2-201ENST00000609238 400 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC090527.3-201ENST00000619041 548 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AL359955.1-201ENST00000455242 3275 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 CASC19-260ENST00000641828 2001 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 MTCO1P7-201ENST00000419523 1542 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RNA5SP305-201ENST00000362665 119 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 Y_RNA.192-201ENST00000363977 102 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RN7SKP186-201ENST00000365371 303 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RNU6-157P-201ENST00000383957 107 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RNU1-106P-201ENST00000384382 164 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RSL24D1P4-201ENST00000400938 484 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 U3.36-201ENST00000408418 213 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 MIR1303-201ENST00000408625 86 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC011233.1-201ENST00000422812 283 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 CNOT7P1-201ENST00000429006 852 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 KRT8P51-201ENST00000438938 274 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC090114.3-201ENST00000479267 829 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 CR383656.1-201ENST00000484916 377 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RN7SL97P-201ENST00000486780 299 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC109462.1-201ENST00000491087 368 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RPS17P5-201ENST00000498293 408 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC026782.2-201ENST00000510845 636 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC109464.1-201ENST00000511091 819 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 GAPDHP62-201ENST00000515313 990 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 IGJP1-201ENST00000522682 475 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AP000619.2-201ENST00000546014 969 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 NMNAT1P5-201ENST00000559657 841 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 MIR4666A-201ENST00000580160 79 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC006116.3-201ENST00000592968 361 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC024940.4-201ENST00000605507 246 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 AC092070.2-203ENST00000598377 3644 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 CASC19-284ENST00000642142 1868 ntBASIC5.6□□□□□ -1.51
TDP1Q9NUW8 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TDP1Q9NUW8 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms