Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC008033.1-201ENST00000216407 1162 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RPL24P4-201ENST00000326586 421 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 Y_RNA.381-201ENST00000365666 102 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RPL31P52-201ENST00000407532 367 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AL139135.1-201ENST00000412675 209 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AL353193.1-201ENST00000421444 268 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC104837.2-201ENST00000427236 424 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 PSMA6P3-201ENST00000428242 164 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RPL7P54-201ENST00000438336 674 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RPL23AP20-201ENST00000447965 421 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 TPT1P14-201ENST00000448018 505 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 GAPDHP14-201ENST00000450472 937 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 PRPF38AP1-201ENST00000451976 933 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC092001.1-201ENST00000453012 261 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RN7SL216P-201ENST00000471607 298 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 ATP5LP5-201ENST00000483050 299 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC079382.1-201ENST00000493346 557 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC018710.1-201ENST00000506509 158 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RNU6-875P-201ENST00000516488 106 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC087752.2-201ENST00000521219 281 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AL512310.1-201ENST00000548639 172 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AL162632.2-201ENST00000553933 399 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RN7SL199P-201ENST00000578752 281 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RN7SL656P-201ENST00000579044 281 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RN7SL404P-201ENST00000582421 281 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AL353997.4-201ENST00000586196 166 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 RPS27AP19-201ENST00000597285 458 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC019257.2-201ENST00000605539 497 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC008945.2-201ENST00000606056 604 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC092681.3-201ENST00000609463 678 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 MIR6864-201ENST00000617935 70 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 NPL-212ENST00000614468 2376 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC138915.3-201ENST00000562908 1389 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 LPAL2-203ENST00000454031 2498 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 Z97989.1-201ENST00000531702 2421 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms