Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 RNU4-6P-201ENST00000410804 122 ntBASIC5.33□□□□□ -1.56
COL5A3P25940 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.33□□□□□ -1.56
COL5A3P25940 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 AL157884.3-201ENST00000448273 1184 ntBASIC5.33□□□□□ -1.56
COL5A3P25940 RPS11P1-201ENST00000451072 473 ntBASIC5.33□□□□□ -1.56
COL5A3P25940 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.33□□□□□ -1.56
COL5A3P25940 ATP5G1P3-201ENST00000463301 410 ntBASIC5.33□□□□□ -1.56
COL5A3P25940 RPS4XP18-201ENST00000495480 763 ntBASIC5.33□□□□□ -1.56
COL5A3P25940 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.33□□□□□ -1.56
COL5A3P25940 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.33□□□□□ -1.56
COL5A3P25940 AC099669.2-201ENST00000616549 437 ntBASIC5.33□□□□□ -1.56
COL5A3P25940 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.33□□□□□ -1.56
COL5A3P25940 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
COL5A3P25940 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.33□□□□□ -1.56
COL5A3P25940 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.33□□□□□ -1.56
COL5A3P25940 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL5A3P25940 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL5A3P25940 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.33□□□□□ -1.56
COL5A3P25940 AC093591.2-201ENST00000565254 3843 ntBASIC5.32□□□□□ -1.56
COL5A3P25940 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.32□□□□□ -1.56
COL5A3P25940 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL5A3P25940 OR4A15-201ENST00000314706 1035 ntBASIC5.32□□□□□ -1.56
COL5A3P25940 MIR449B-201ENST00000384995 97 ntBASIC5.32□□□□□ -1.56
COL5A3P25940 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.32□□□□□ -1.56
COL5A3P25940 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL5A3P25940 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.32□□□□□ -1.56
COL5A3P25940 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL5A3P25940 RPL38P1-201ENST00000460914 211 ntBASIC5.32□□□□□ -1.56
COL5A3P25940 AC108751.2-201ENST00000469993 231 ntBASIC5.32□□□□□ -1.56
COL5A3P25940 AC093815.1-201ENST00000508637 280 ntBASIC5.32□□□□□ -1.56
COL5A3P25940 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.32□□□□□ -1.56
COL5A3P25940 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL5A3P25940 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.32□□□□□ -1.56
COL5A3P25940 AC024220.1-201ENST00000603675 484 ntBASIC5.32□□□□□ -1.56
COL5A3P25940 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.32□□□□□ -1.56
COL5A3P25940 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL5A3P25940 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL5A3P25940 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL5A3P25940 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL5A3P25940 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A3P25940 RPL7P15-201ENST00000461190 712 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A3P25940 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A3P25940 AC022655.2-201ENST00000577280 318 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 CR392039.5-201ENST00000623201 510 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 TET1P1-201ENST00000426627 2301 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 AL627171.1-201ENST00000618845 1308 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
COL5A3P25940 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.31□□□□□ -1.56
COL5A3P25940 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 MIR1911-201ENST00000410783 80 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 GTF3AP5-201ENST00000442645 697 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.31□□□□□ -1.56
COL5A3P25940 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A3P25940 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 AC090286.3-201ENST00000573133 187 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.31□□□□□ -1.56
COL5A3P25940 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A3P25940 AC110743.1-201ENST00000584870 478 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 MIR5684-201ENST00000585074 65 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 AC114878.2-201ENST00000604863 1251 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 AC015967.1-201ENST00000619893 476 ntBASIC5.31□□□□□ -1.56
COL5A3P25940 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A3P25940 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL5A3P25940 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A3P25940 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A3P25940 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A3P25940 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
COL5A3P25940 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A3P25940 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A3P25940 AC091286.1-201ENST00000431233 461 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 AC006011.1-201ENST00000442758 349 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 ABCF2P2-201ENST00000450549 296 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 RPS29P19-201ENST00000479709 171 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 AC090013.1-201ENST00000485147 480 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 AC110792.1-201ENST00000491826 472 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 HMGB3P16-201ENST00000508037 287 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms