Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A3P12111 RNU1-20P-201ENST00000363314 162 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A3P12111 OR5BE1P-201ENST00000425977 939 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 RPL7P59-201ENST00000447700 943 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 AL049830.4-201ENST00000555149 351 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 OR5BE1P-202ENST00000641168 1176 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 CDY11P-201ENST00000447168 1651 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL6A3P12111 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A3P12111 RNF19BPX-201ENST00000426224 625 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AL935212.3-201ENST00000450729 284 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC012671.1-201ENST00000451912 203 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A3P12111 RN7SKP67-201ENST00000515905 235 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC4.32□□□□□ -1.72
COL6A3P12111 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 SNORA3C-201ENST00000408792 125 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.32□□□□□ -1.72
COL6A3P12111 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A3P12111 AC092641.1-201ENST00000440229 772 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC025750.2-201ENST00000442609 450 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC104619.4-201ENST00000510773 249 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.32□□□□□ -1.72
COL6A3P12111 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A3P12111 AC006023.1-201ENST00000603944 259 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC243312.2-201ENST00000623340 601 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A3P12111 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.32□□□□□ -1.72
COL6A3P12111 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.32□□□□□ -1.72
COL6A3P12111 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.32□□□□□ -1.72
COL6A3P12111 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
COL6A3P12111 SNORA80A-201ENST00000363922 136 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 RNA5SP267-201ENST00000364893 126 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC005326.1-201ENST00000429197 123 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A3P12111 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
COL6A3P12111 IGKV2-38-201ENST00000517443 247 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 NDUFA5P2-201ENST00000519723 344 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 CYCSP30-201ENST00000546447 172 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 AC243654.2-201ENST00000612843 443 ntBASIC4.32□□□□□ -1.72
COL6A3P12111 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A3P12111 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A3P12111 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 MAPK10-303ENST00000641324 3959 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
COL6A3P12111 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
COL6A3P12111 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC4.31□□□□□ -1.72
COL6A3P12111 AC008065.1-201ENST00000428525 348 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 RPEP2-201ENST00000432149 701 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.31□□□□□ -1.72
COL6A3P12111 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A3P12111 AC092709.1-201ENST00000521355 1045 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.31□□□□□ -1.72
COL6A3P12111 AL449283.1-201ENST00000602631 3403 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
COL6A3P12111 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.31□□□□□ -1.72
COL6A3P12111 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A3P12111 RPS11P1-201ENST00000451072 473 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 UBDP1-202ENST00000457888 382 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.31□□□□□ -1.72
COL6A3P12111 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.31□□□□□ -1.72
COL6A3P12111 MIR6868-201ENST00000611215 58 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 MIR7112-201ENST00000616126 65 ntBASIC4.31□□□□□ -1.72
COL6A3P12111 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC4.31□□□□□ -1.72
COL6A3P12111 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 PPFIA2-216ENST00000549396 5363 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL6A3P12111 Y_RNA.238-201ENST00000364441 102 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 RNU4-64P-201ENST00000410795 131 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 MTND4LP17-201ENST00000414607 293 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 TRIM60P17-201ENST00000415181 719 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.3□□□□□ -1.72
COL6A3P12111 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.3□□□□□ -1.72
COL6A3P12111 RPL35AP15-201ENST00000468042 339 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.3□□□□□ -1.72
COL6A3P12111 RN7SKP248-201ENST00000516278 305 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.3□□□□□ -1.72
COL6A3P12111 AC027667.1-201ENST00000545814 304 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms