Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIMD1Q9UGP4 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 KIAA0753-201ENST00000361413 4859 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AL359396.1-201ENST00000623151 2376 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RNU1-65P-201ENST00000363919 148 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RNU4-1-201ENST00000363925 141 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 Y_RNA.259-201ENST00000364619 101 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RPL32P23-201ENST00000397237 405 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RN7SKP188-201ENST00000410789 317 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC078974.1-201ENST00000411597 223 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AL593856.1-201ENST00000419949 805 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RPS7P14-201ENST00000426405 583 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 GPM6BP2-201ENST00000432046 144 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 GPM6BP1-201ENST00000446387 144 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC104651.2-201ENST00000447549 528 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 IGKV1OR2-2-201ENST00000451163 355 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RPSAP7-201ENST00000456871 885 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RNU6-329P-201ENST00000459618 107 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC104339.1-201ENST00000465478 348 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC040975.1-201ENST00000472104 316 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 BTF3P13-201ENST00000513224 490 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RNU6-410P-201ENST00000517006 107 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 IGLC4-201ENST00000517690 248 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 SOD1P3-201ENST00000518682 454 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC022616.3-201ENST00000523940 148 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 PPIAP6-201ENST00000557078 499 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC068714.1-201ENST00000559623 800 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC011447.2-201ENST00000592921 283 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC087763.1-201ENST00000603391 286 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AL499605.1-201ENST00000604628 403 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC040896.1-201ENST00000613819 479 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RN7SL126P-201ENST00000616400 299 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 AC073593.1-201ENST00000624500 411 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 ZNF652P1-201ENST00000442420 1309 ntBASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RGS6-205ENST00000406236 1476 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
LIMD1Q9UGP4 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 AC006020.1-201ENST00000420179 1854 ntBASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 AC092125.1-201ENST00000562568 1995 ntBASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC7.4□□□□□ -1.23
LIMD1Q9UGP4 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 MORC1-202ENST00000483760 3056 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC134882.1-201ENST00000603738 1676 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC090132.1-201ENST00000524071 1480 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 153.2 ms