Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 FAM26E-201ENST00000368599 9784 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AC010733.2-201ENST00000589496 5702 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 SNORA57.3-201ENST00000411095 141 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AL136126.1-201ENST00000473603 402 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 MIR5684-201ENST00000585074 65 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 TTC3P1-201ENST00000399586 6081 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AL139099.1-201ENST00000497398 403 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 UBE2CP3-201ENST00000502715 450 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AC025175.1-201ENST00000606482 759 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AC135507.2-201ENST00000612443 309 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AC006994.1-201ENST00000438212 839 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 RN7SKP57-201ENST00000517248 293 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 Z95327.3-201ENST00000610385 572 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 USP9YP4-201ENST00000424401 1745 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 RNU2-65P-201ENST00000410162 185 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 PRDX3P3-201ENST00000447765 522 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 RPL35AP15-201ENST00000468042 339 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AGGF1P9-201ENST00000561884 913 ntBASIC4.12□□□□□ -1.75
VPS13AQ96RL7 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS13AQ96RL7 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AC005300.1-201ENST00000428401 373 ntBASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 RPL5P24-201ENST00000463742 885 ntBASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AC107294.1-201ENST00000609524 467 ntBASIC4.11□□□□□ -1.75
VPS13AQ96RL7 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AC006064.5-201ENST00000541782 248 ntBASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AL049634.3-201ENST00000604968 457 ntBASIC4.11□□□□□ -1.75
VPS13AQ96RL7 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 PRO1804-201ENST00000623780 2050 ntBASIC4.11□□□□□ -1.75
VPS13AQ96RL7 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
VPS13AQ96RL7 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms