Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 TLK1P1-201ENST00000456760 2440 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS39Q96JC1 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC092435.4-201ENST00000623012 4159 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 A2MP1-204ENST00000566278 4130 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 C4BPAP1-201ENST00000415474 1893 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC022893.2-201ENST00000564832 3296 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 U8.4-201ENST00000363626 134 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 ATP5F1P2-201ENST00000398143 760 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 RPL7P57-201ENST00000423238 740 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 UBE2V2P3-201ENST00000433562 437 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 XKRYP6-201ENST00000440468 1116 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 XKRYP3-201ENST00000442113 1116 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC092647.3-201ENST00000443044 633 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 EEF1B2P5-201ENST00000444820 548 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC104651.2-201ENST00000447549 528 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 AL645937.3-201ENST00000453647 936 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 OR52A4P-201ENST00000472867 958 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 RN7SL177P-201ENST00000476596 299 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 RPS4XP14-201ENST00000493072 781 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC016550.3-201ENST00000515706 767 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 RNU6-551P-201ENST00000516661 103 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 RN7SKP147-201ENST00000517154 244 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC013701.1-201ENST00000522657 465 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC074029.2-201ENST00000551045 634 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 MIR3691-201ENST00000578066 90 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 BNIP3P7-201ENST00000605641 516 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC015813.6-201ENST00000624409 5808 ntBASIC4.77□□□□□ -1.65
VPS39Q96JC1 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS39Q96JC1 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS39Q96JC1 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 MIR421-201ENST00000365696 85 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AL031119.1-201ENST00000404707 1879 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 AL080315.1-201ENST00000406055 466 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 MIR1178-201ENST00000408396 91 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC114755.2-201ENST00000413520 361 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 BX510359.3-201ENST00000422168 306 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 RFESDP1-201ENST00000422350 461 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 PRPF38AP2-201ENST00000438179 851 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 Z80107.2-201ENST00000445127 392 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 RNU6-775P-201ENST00000459318 96 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC006511.1-201ENST00000470614 315 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 RPL37AP8-201ENST00000494116 276 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC093763.2-201ENST00000505334 1223 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC022784.5-201ENST00000522241 437 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 OR5AN2P-201ENST00000534535 896 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC011453.2-201ENST00000603737 729 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC022387.2-201ENST00000604050 448 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 SNORD91B-202ENST00000608459 222 ntBASIC4.76□□□□□ -1.65
VPS39Q96JC1 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC119674.1-220ENST00000641502 1048 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms