Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 TLK1P1-201ENST00000456760 2440 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 RN7SKP44-201ENST00000363602 316 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 RNA5SP90-201ENST00000364801 99 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AL645927.1-201ENST00000396783 406 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 OR4K12P-201ENST00000406538 961 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 OR52B5P-201ENST00000435337 951 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 PTMAP6-201ENST00000439110 327 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AL772161.1-201ENST00000439130 476 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 RPS29P10-201ENST00000439197 166 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 FAR2P1-206ENST00000449736 709 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 SBDSP1-204ENST00000453858 737 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 RPSAP50-201ENST00000481955 852 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 RPS4XP1-201ENST00000482189 787 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 ARL4AP1-201ENST00000503220 705 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 SNRPCP2-201ENST00000504370 475 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC115085.1-201ENST00000588924 229 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC067852.4-201ENST00000590314 478 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC068870.2-201ENST00000620635 389 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 OR52B5P-202ENST00000641118 1110 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 MTCO1P8-201ENST00000416914 1523 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 AC134882.1-201ENST00000603738 1676 ntBASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
ZNF540Q8NDQ6 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 SNORA58B-201ENST00000364259 136 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 SNORA2.3-201ENST00000383920 135 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 MIR765-201ENST00000390226 114 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 RNA5SP339-201ENST00000390987 122 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 MIR937-201ENST00000401271 86 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 DPPA2P3-201ENST00000411853 655 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC007394.1-201ENST00000421941 531 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 EIF4HP2-201ENST00000424380 563 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC108075.1-201ENST00000424692 529 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 RPS26P2-201ENST00000440331 348 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 MRPL48P1-201ENST00000445390 636 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AURKAPS1-201ENST00000451805 1212 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC005532.2-201ENST00000467154 373 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC004453.1-201ENST00000487895 408 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC109462.1-201ENST00000491087 368 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 HMGB3P13-201ENST00000511263 607 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AP002812.4-201ENST00000532139 286 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 DDX18P5-201ENST00000534547 1306 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC138393.1-206ENST00000540997 1886 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 DCAF13P3-201ENST00000561147 1334 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms