Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SCN4AP35499 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
SCN4AP35499 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
SCN4AP35499 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 RNA5SP130-201ENST00000364431 114 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SCN4AP35499 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.27□□□□□ -1.57
SCN4AP35499 RN7SKP235-201ENST00000410662 305 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 RPL6P29-201ENST00000414863 865 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AC108032.1-201ENST00000416706 207 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AL935212.3-201ENST00000450729 284 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AC099522.1-202ENST00000514718 367 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 RNA5SP73-201ENST00000516744 108 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AC107982.3-201ENST00000584957 985 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.27□□□□□ -1.57
SCN4AP35499 AC006363.1-201ENST00000603806 463 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SCN4AP35499 AC243756.2-201ENST00000618406 463 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.27□□□□□ -1.57
SCN4AP35499 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
SCN4AP35499 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SCN4AP35499 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SCN4AP35499 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SCN4AP35499 RLIMP1-201ENST00000339626 1680 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC5.27□□□□□ -1.57
SCN4AP35499 AL590806.1-201ENST00000415818 853 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.27□□□□□ -1.57
SCN4AP35499 AL500522.2-201ENST00000448562 343 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.27□□□□□ -1.57
SCN4AP35499 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.27□□□□□ -1.57
SCN4AP35499 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.27□□□□□ -1.57
SCN4AP35499 AC112230.1-201ENST00000604342 547 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AC019176.2-201ENST00000611579 315 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 FAM27D1-201ENST00000612308 341 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AL121772.2-201ENST00000614331 297 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 AC004656.1-201ENST00000568479 4951 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SCN4AP35499 TCP1P3-201ENST00000414406 1498 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.27□□□□□ -1.57
SCN4AP35499 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.27□□□□□ -1.57
SCN4AP35499 AL445487.1-201ENST00000415694 1580 ntBASIC5.27□□□□□ -1.57
SCN4AP35499 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.26□□□□□ -1.57
SCN4AP35499 AP005435.3-201ENST00000531260 3198 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.26□□□□□ -1.57
SCN4AP35499 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SCN4AP35499 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SCN4AP35499 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.26□□□□□ -1.57
SCN4AP35499 ENSAP1-201ENST00000392855 326 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 MIR1271-201ENST00000408537 86 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AP000357.1-201ENST00000409926 1165 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 PTMAP3-201ENST00000447474 330 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 SNORA59A-201ENST00000459326 152 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.26□□□□□ -1.57
SCN4AP35499 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SCN4AP35499 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.26□□□□□ -1.57
SCN4AP35499 RN7SKP157-201ENST00000516174 282 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AC026403.1-201ENST00000518938 295 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 RPL23AP53-201ENST00000521854 457 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.26□□□□□ -1.57
SCN4AP35499 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SCN4AP35499 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.26□□□□□ -1.57
SCN4AP35499 AC090912.3-201ENST00000609775 533 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AC012314.7-201ENST00000619693 93 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AC015967.1-201ENST00000619893 476 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AC007342.8-201ENST00000623278 678 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SCN4AP35499 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
SCN4AP35499 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.26□□□□□ -1.57
SCN4AP35499 BCORP1-203ENST00000513194 5093 ntBASIC5.26□□□□□ -1.57
SCN4AP35499 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SCN4AP35499 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SCN4AP35499 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SCN4AP35499 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SCN4AP35499 RNU6-316P-201ENST00000391027 107 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 AL359643.1-201ENST00000404109 423 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 AC013429.2-201ENST00000418798 781 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 OR8F1P-201ENST00000425243 930 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 AL353748.1-201ENST00000440753 474 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 AC114495.1-201ENST00000441274 436 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.25□□□□□ -1.57
SCN4AP35499 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.25□□□□□ -1.57
SCN4AP35499 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.25□□□□□ -1.57
SCN4AP35499 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.25□□□□□ -1.57
SCN4AP35499 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC5.25□□□□□ -1.57
SCN4AP35499 AC022106.2-201ENST00000620114 757 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.25□□□□□ -1.57
SCN4AP35499 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SCN4AP35499 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
SCN4AP35499 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SCN4AP35499 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
SCN4AP35499 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SCN4AP35499 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.25□□□□□ -1.57
SCN4AP35499 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.25□□□□□ -1.57
SCN4AP35499 AC004817.4-201ENST00000602396 3625 ntBASIC5.25□□□□□ -1.57
SCN4AP35499 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SCN4AP35499 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms