Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BX323845.2-201ENST00000458382 234 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RNU7-136P-201ENST00000458819 69 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RNU7-152P-201ENST00000458982 64 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RNU7-63P-201ENST00000459054 62 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC068587.1-201ENST00000483613 781 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RN7SL797P-201ENST00000486314 297 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RN7SL306P-201ENST00000492941 296 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RPL23AP80-201ENST00000495605 424 ntBASIC6.57□□□□□ -1.36
MSX1P28360 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX1P28360 TECRP2-201ENST00000503270 928 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 SCARNA6.1-201ENST00000516989 238 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 AC022634.1-201ENST00000520765 532 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX1P28360 AP003072.2-201ENST00000527756 676 ntBASIC6.57□□□□□ -1.36
MSX1P28360 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX1P28360 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 AC126177.6-201ENST00000550420 1009 ntBASIC6.57□□□□□ -1.36
MSX1P28360 SNRPGP18-201ENST00000553000 214 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 AL121579.2-201ENST00000555466 590 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX1P28360 AL109628.1-201ENST00000556877 366 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX1P28360 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 CYP2C61P-201ENST00000604072 290 ntBASIC6.57□□□□□ -1.36
MSX1P28360 Z84480.1-201ENST00000605131 311 ntBASIC6.57□□□□□ -1.36
MSX1P28360 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 MIR6813-201ENST00000621638 56 ntBASIC6.57□□□□□ -1.36
MSX1P28360 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.57□□□□□ -1.36
MSX1P28360 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.57□□□□□ -1.36
MSX1P28360 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
MSX1P28360 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
MSX1P28360 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 AC006020.1-201ENST00000420179 1854 ntBASIC6.56□□□□□ -1.36
MSX1P28360 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
MSX1P28360 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 Y_RNA.28-201ENST00000362554 111 ntBASIC6.56□□□□□ -1.36
MSX1P28360 Y_RNA.255-201ENST00000364581 97 ntBASIC6.56□□□□□ -1.36
MSX1P28360 RNU6-108P-201ENST00000365558 107 ntBASIC6.56□□□□□ -1.36
MSX1P28360 RNU6-730P-201ENST00000383954 104 ntBASIC6.56□□□□□ -1.36
MSX1P28360 RNU6-831P-201ENST00000384548 107 ntBASIC6.56□□□□□ -1.36
MSX1P28360 RPS3AP5-201ENST00000389400 821 ntBASIC6.56□□□□□ -1.36
MSX1P28360 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
MSX1P28360 AL034417.1-201ENST00000399343 800 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AL592114.1-201ENST00000403842 483 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AL591416.1-201ENST00000404015 867 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AL034374.1-201ENST00000406329 351 ntBASIC6.56□□□□□ -1.36
MSX1P28360 RNU2-28P-201ENST00000410457 189 ntBASIC6.56□□□□□ -1.36
MSX1P28360 RNU6-272P-201ENST00000411028 104 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AC244452.1-201ENST00000413798 141 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AL353777.1-201ENST00000425552 326 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX1P28360 GAPDHP14-201ENST00000450472 937 ntBASIC6.56□□□□□ -1.36
MSX1P28360 RPSAP7-201ENST00000456871 885 ntBASIC6.56□□□□□ -1.36
MSX1P28360 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 RN7SL267P-201ENST00000485107 261 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX1P28360 SSX8-201ENST00000506270 579 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX1P28360 RNU6-988P-201ENST00000519081 107 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC6.56□□□□□ -1.36
MSX1P28360 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC6.56□□□□□ -1.36
MSX1P28360 AC090502.2-201ENST00000549267 280 ntBASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms