Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
COL8A1P27658 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 GJB7-203ENST00000525899 2281 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 RNU6-1339P-201ENST00000363574 91 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 Y_RNA.301-201ENST00000364990 103 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 AL583835.1-201ENST00000399570 407 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC092745.2-202ENST00000411880 369 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 RPS29P14-201ENST00000431518 171 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC104332.1-201ENST00000440471 797 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 GAPDHP23-201ENST00000444823 993 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 POU5F1P5-201ENST00000445059 658 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 RPL12P25-201ENST00000455592 494 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 Y_RNA.653-201ENST00000459091 95 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 RPL5P30-201ENST00000465511 891 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC094085.1-201ENST00000468914 584 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC013356.1-201ENST00000489027 564 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 AC106872.3-201ENST00000495104 446 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 GZMAP1-201ENST00000503054 631 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 RPL32P3-203ENST00000506593 498 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 IGHVIII-26-1-201ENST00000520387 250 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC6.22□□□□□ -1.41
COL8A1P27658 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.22□□□□□ -1.41
COL8A1P27658 OR5M6P-201ENST00000530227 937 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 NMNAT1P1-201ENST00000554095 876 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.22□□□□□ -1.41
COL8A1P27658 AL845552.1-201ENST00000556820 323 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC6.22□□□□□ -1.41
COL8A1P27658 HMGB1P6-201ENST00000569046 646 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC6.22□□□□□ -1.41
COL8A1P27658 RN7SL667P-201ENST00000582817 298 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 AC011447.2-201ENST00000592921 283 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 AC096772.1-201ENST00000609146 564 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 AC004241.2-201ENST00000614562 444 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 AC005514.1-201ENST00000623521 208 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.22□□□□□ -1.41
COL8A1P27658 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
COL8A1P27658 MAPK10-244ENST00000639972 2818 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 MTCO1P14-201ENST00000441695 1559 ntBASIC6.22□□□□□ -1.41
COL8A1P27658 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 ERVFRD-1-202ENST00000542862 3184 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL8A1P27658 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 ZNF878-201ENST00000547628 1734 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
COL8A1P27658 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL8A1P27658 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL8A1P27658 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL8A1P27658 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL8A1P27658 FCGR3A-201ENST00000367967 2086 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.41
COL8A1P27658 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.21□□□□□ -1.42
COL8A1P27658 FAM32BP-201ENST00000344033 333 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 Y_RNA.5-201ENST00000362334 102 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 Y_RNA.153-201ENST00000363615 91 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 NFIB-202ENST00000380924 840 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 RNU4-31P-201ENST00000384211 141 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 MIR152-201ENST00000385212 87 ntBASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms