Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNX18P1Y-201ENST00000616231 511 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 MIR7703-201ENST00000620784 77 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC006453.5-201ENST00000636451 619 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AC119674.1-220ENST00000641502 1048 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
HOXD4P09016 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXD4P09016 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 AC068446.1-201ENST00000556425 1549 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AC015813.6-201ENST00000624409 5808 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXD4P09016 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HOXD4P09016 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
HOXD4P09016 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
HOXD4P09016 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 ECM1P2-201ENST00000503354 1577 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 MTND4P26-201ENST00000415971 1359 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.44□□□□□ -1.7
HOXD4P09016 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXD4P09016 RNA5SP105-201ENST00000391123 113 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXD4P09016 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXD4P09016 ATG4AP1-201ENST00000416893 538 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXD4P09016 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXD4P09016 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXD4P09016 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXD4P09016 MRPS33P4-201ENST00000434892 317 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 CYCSP34-201ENST00000458172 304 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AC092905.1-201ENST00000467527 949 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 RN7SL354P-201ENST00000469282 294 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXD4P09016 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXD4P09016 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXD4P09016 IGKV2D-10-201ENST00000520194 281 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 AC092451.2-201ENST00000538746 658 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 GLRXP2-201ENST00000555594 321 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXD4P09016 MIR4284-201ENST00000578924 81 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXD4P09016 EIF1P5-201ENST00000585002 234 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXD4P09016 AC026790.2-201ENST00000606282 430 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 AC019193.2-201ENST00000610012 634 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 AC009237.17-201ENST00000618111 748 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.44□□□□□ -1.7
HOXD4P09016 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.44□□□□□ -1.7
HOXD4P09016 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 Z95331.1-201ENST00000623075 23112 ntBASIC4.44□□□□□ -1.7
HOXD4P09016 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXD4P09016 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
HOXD4P09016 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.43□□□□□ -1.7
HOXD4P09016 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXD4P09016 LINC01355-201ENST00000566551 5444 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXD4P09016 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 AL160275.2-201ENST00000412010 394 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 GTF2IP5-201ENST00000414608 731 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 TRIM60P17-201ENST00000415181 719 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 OR2X1P-201ENST00000421144 687 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 ARAFP1-201ENST00000422172 605 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms